| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,658,070 – 21,658,163 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 21,658,070 – 21,658,163 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.72 |
| Mean single sequence MFE | -25.37 |
| Consensus MFE | -14.76 |
| Energy contribution | -14.63 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.08 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21658070 93 - 27905053 UGGCUAAGGAAUUCUGCACGUGCUUUUUAUUCUUAGCCUUGCUAUCGAUGAGA---------------UUUGCUUUCUUCGUCGAAUUCGUUAGUUCUGUUUGUGCUU .((((((.((((((.(((.(.(((..........)))).)))....(((((((---------------.......)).))))))))))).))))))............ ( -23.10) >DroSec_CAF1 147299 108 - 1 UGGCUAAGGAAUUUUGCACAUGGUUUUUAUUCUUAGCCUUGCUAUCGAUUGAAUUUUUAGGUAGAGGGUUUGCUUUCUUCGUUGAAUUCGUUAGUUCUGUUUGUUCAU .(((((((((.....((.....)).....)))))))))..((((.....(((((((...((.((((((....))))))))...))))))).))))............. ( -24.30) >DroSim_CAF1 145441 108 - 1 UGGCUAAGGAAUUCUGCACAUGGUUUUUAUUCUUAGCCUUGCCACCGAUUGGAUUUUUUCGAAGAGGGUUUGCUUUCUUCGUUGAAUUCGUUAGUUCUGUUUGUUCCU .(((((((((.....((.....)).....))))))))).....((..((.((((((...(((((((((....)))))))))..))))))))..))............. ( -28.70) >consensus UGGCUAAGGAAUUCUGCACAUGGUUUUUAUUCUUAGCCUUGCUAUCGAUUGGAUUUUU__G_AGAGGGUUUGCUUUCUUCGUUGAAUUCGUUAGUUCUGUUUGUUCAU .((((((.((((((.((.((.((((.........)))).)).........((((((((.....)))))))).........)).)))))).))))))............ (-14.76 = -14.63 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:50 2006