Locus 8066

Sequence ID 3R_DroMel_CAF1
Location 21,653,905 – 21,654,024
Length 119
Max. P 0.737318
window12985

overview

Window 5

Location 21,653,905 – 21,654,024
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 78.43
Mean single sequence MFE -27.20
Consensus MFE -16.27
Energy contribution -16.02
Covariance contribution -0.25
Combinations/Pair 1.05
Mean z-score -1.94
Structure conservation index 0.60
SVM decision value 0.44
SVM RNA-class probability 0.737318
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21653905 119 - 27905053
AUGGCAACCAAAAAUUGGAAACGAAAGUUGAUUGGGAUUUUGUUGUUAGACGAUUGCUGGCUAAGCAAAUGAUACAAAUUCAUAAACUAUGCCAACUAACGAAUUUGUGUUCAUUGUGU
.(((((((.(((..(..(.(((....)))..)..)..))).))))))).(((((((((.....)))))..(((((((((((...................)))))))))))..)))).. ( -26.61)
>DroSim_CAF1 141329 90 - 1
AUGGCAACCAAAAAUUGGAAACGAAAGUUGAUUGGGAUUUCGUUGUUAGACGAUUGCUGGCUAAGCAAAUGAUACCAAUUCAUAAA-----------------------------CUGU
.......(((.....))).(((....)))((((((....(((((....)))))(((((.....)))))......))))))......-----------------------------.... ( -19.30)
>DroEre_CAF1 140264 116 - 1
AUGGCAACCAAAAAUUGGAAACGAAAGUUGGUUGGACUAUCGUUGUUGGGCGAUUGCUGGCUAAGCAAAUGAUACAAAUUCAUAAAAUAUGUCAACUAACGAAUUUCCAUUCCAU---A
((((.((((((...(((....)))...))))))(((...((((((((((.((.(((((.....)))))((((.......))))......))))))).)))))...)))...))))---. ( -31.90)
>DroYak_CAF1 141473 118 - 1
AUGGCAACCAGAAAUUGGAAACGAAAGUUGAUUGGGUU-UCGUUGUUGGGCGAUUGCUGGCUAAGCAAAUGAUACAAAUUCAUAAGCUAAGCCAACUAACGAAUUUGUGUUCAUUGUGA
...((((...((((((.(((((....)))..)).))))-)).(((((((((....))(((((.(((..((((.......))))..))).))))).)))))))...........)))).. ( -31.00)
>consensus
AUGGCAACCAAAAAUUGGAAACGAAAGUUGAUUGGGAUUUCGUUGUUAGACGAUUGCUGGCUAAGCAAAUGAUACAAAUUCAUAAACUAUGCCAACUAACGAAUUUGUGUUCAUUGUGA
.(((((((......(..(.(((....)))..)..)......))))))).....(((((.....)))))((((.......)))).................................... (-16.27 = -16.02 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:45 2006