Locus 8065

Sequence ID 3R_DroMel_CAF1
Location 21,653,456 – 21,653,562
Length 106
Max. P 0.549934
window12984

overview

Window 4

Location 21,653,456 – 21,653,562
Length 106
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 78.94
Mean single sequence MFE -20.88
Consensus MFE -13.00
Energy contribution -13.20
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.62
SVM decision value 0.03
SVM RNA-class probability 0.549934
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21653456 106 - 27905053
AGCAAACAGGG-GGCAAGUGAAAUGUUUACAUUUCUGCUUCGGUUCAUUGCUAUUUAUUCUUUUUCUUUAUCUUUUCCUUUCAACUUGUUGCAGUUUCCUUGUG---------CCU
.(((...(((.-.((((((((((((....)))))).)))).(((.....))).........................................))..)))..))---------).. ( -19.60)
>DroSec_CAF1 142768 83 - 1
AGCAAACAGAG-GCCAAGUGAAAUGUUUACAUUUCUGCUUCGGUUGAAUU---------CUUUUUCGU------UUUCCUUCAACUUGUUGCAGUUUC-----------------C
.((((.(((((-((.....((((((....)))))).)))))(((((((..---------.........------.....)))))))))))))......-----------------. ( -19.29)
>DroSim_CAF1 140886 100 - 1
AGCAAACAGAG-GGCAAGUGAAAUGUUUACAUUUCUGCUUCGGUUGAUUGCUAUUUAGACUUUUUCUU------UUUCCUUCAACUUGUUGCAGUUUCCUUGUG---------CCC
..........(-((((...((((((....))))))(((...((((((.........(((.....))).------......))))))....))).........))---------))) ( -21.09)
>DroEre_CAF1 139836 104 - 1
AGCAAACAGAGAGGCAAGUGAAAUGUUUACAUUUCUGCUUCGGUUCAGUGCUAUUUA------UUCUU------UUUCCUUCAACUUGUUGCAGUUUCCUUCUGUGAGUGAGUUCU
(((((((...((((((...((((((....)))))))))))).)))...)))).....------.....------........((((..((((((.......)))).))..)))).. ( -24.50)
>DroYak_CAF1 141022 94 - 1
AGCAAACAGAG-GGCAAGUGAAAUGUUUACAUUUCUGCUUCGGUUCAUUGCUAUUUA------UUCUA------UUUCUUUCAACUUGUUGCACUUUCCUUCUG---------CCU
......(((((-((.((((((((((....)))))).((....)).............------.....------..................)))).)))))))---------... ( -19.90)
>consensus
AGCAAACAGAG_GGCAAGUGAAAUGUUUACAUUUCUGCUUCGGUUCAUUGCUAUUUA__CUUUUUCUU______UUUCCUUCAACUUGUUGCAGUUUCCUUCUG_________CCU
.(((.........((((((((((((....)))))).((....)).......................................)))))))))........................ (-13.00 = -13.20 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:44 2006