Locus 8064

Sequence ID 3R_DroMel_CAF1
Location 21,652,819 – 21,652,912
Length 93
Max. P 0.720688
window12983

overview

Window 3

Location 21,652,819 – 21,652,912
Length 93
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 82.09
Mean single sequence MFE -32.33
Consensus MFE -18.23
Energy contribution -18.57
Covariance contribution 0.34
Combinations/Pair 1.21
Mean z-score -2.61
Structure conservation index 0.56
SVM decision value 0.40
SVM RNA-class probability 0.720688
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21652819 93 + 27905053
AACAAAAUUUGCGUCACUUUUGCGGCUGCACCUGCGG----CCGUCAACGGCAGGUGUUUGCCUCGC--------CCUC-------------GUAAGCUGCACUUUCCGGCAAAUAAA
......((((((.......((((((((((....))))----))).)))(((.((((((..((..((.--------...)-------------)...)).)))))).)))))))))... ( -34.00)
>DroSec_CAF1 142145 93 + 1
AACAAAAUUUGCGUCACUUUUGCGGCUGCACCUGCGG----CCGUCAACGGCAGGUGUUUGCCUCGC--------CCUC-------------GUAAGCUGCACUUUCCGGCAAAUAAA
......((((((.......((((((((((....))))----))).)))(((.((((((..((..((.--------...)-------------)...)).)))))).)))))))))... ( -34.00)
>DroSim_CAF1 140247 93 + 1
AACAAAAUUUGCGUCACUUUUGCGGCUGCACCUGCGG----CCGUCAACGGCAGGUGUUUGCCUCGC--------CCUC-------------GUAAGCUGCACUUUCCGGCAAAUAAA
......((((((.......((((((((((....))))----))).)))(((.((((((..((..((.--------...)-------------)...)).)))))).)))))))))... ( -34.00)
>DroEre_CAF1 139224 92 + 1
AACAAAAUUUGCGUCACUUUUGCGGCUGCACCUGCGG----CCGUCAACGGCAGGUGUUC-CCUCGC--------CCUC-------------GUAAGCUGCACUUUCCAGCAAAUAAA
......((((((.......((((((((((....))))----))).))).((.((((((..-.((..(--------....-------------)..))..)))))).)).))))))... ( -31.50)
>DroYak_CAF1 140390 92 + 1
AACAAAAUUUGCGUCACUAUUGCGGCUGCACCUGCGG----CCGUCAACGGCAGGUGUUU-CCUCGC--------CCUC-------------GUAAGCUGCACUUUCCAGCAAAUAAA
......((((((.......((((((((((....))))----))).))).((.((((((..-.((..(--------....-------------)..))..)))))).)).))))))... ( -31.60)
>DroAna_CAF1 122009 118 + 1
AAUGAAAUCUACGUCACUUUUGUGGCUGCACCUGCCAGCACCUGAUACUGAUACCUGCUUGCUGCACCAUGCCCCCCUCUAAGCCGCUCGGUGUGCGGUGCACUUUCCAGGAAAUAAA
.......(((..(((((....)))))((((((.((.((((...............)))).)).(((((..((.............))..)))))..)))))).......)))...... ( -28.88)
>consensus
AACAAAAUUUGCGUCACUUUUGCGGCUGCACCUGCGG____CCGUCAACGGCAGGUGUUUGCCUCGC________CCUC_____________GUAAGCUGCACUUUCCAGCAAAUAAA
......((((((........(((((((((((((((.(...........).)))))))).......((.........................)).))))))).......))))))... (-18.23 = -18.57 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:43 2006