Locus 8063

Sequence ID 3R_DroMel_CAF1
Location 21,650,658 – 21,650,765
Length 107
Max. P 0.989660
window12982

overview

Window 2

Location 21,650,658 – 21,650,765
Length 107
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -29.22
Consensus MFE -25.60
Energy contribution -25.40
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.91
Structure conservation index 0.88
SVM decision value 2.17
SVM RNA-class probability 0.989660
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21650658 107 - 27905053
UUAGCUAUUUCUAGAGC-GCUGUGGAAACCACAAAAUGGCCAGCGACACGCCGCCCCAGUUAACUUUGCCUUCAAACAUCAUUUGUCAGGGCGAGC---------ACACAAGGCCAA
...(((........)))-..(((((...)))))...(((((.(((......)))..........((((((((...(((.....))).)))))))).---------......))))). ( -28.20)
>DroSec_CAF1 140032 107 - 1
UUAGCUAUUUCUAGAGC-GCUGUGGAAACCACAAAAUGGCCAGCGACACGCCGCCCCAGUUAACUUUGCCUUCAAACAUCAUUUGUCAAGGCGAGC---------ACACAAGGCCAA
...(((........)))-..(((((...)))))...(((((.(((......)))..........((((((((...(((.....))).)))))))).---------......))))). ( -28.50)
>DroSim_CAF1 138073 107 - 1
UUAGCUAUUUCUAGAGC-GCUGUGGAAACCACAAAAUGGCCAGCGACACGCCGCCCCAGUUAACUUUGCCUUCAAACAUCAUUUGUCAAGGCGAGC---------ACACAAGGCCAA
...(((........)))-..(((((...)))))...(((((.(((......)))..........((((((((...(((.....))).)))))))).---------......))))). ( -28.50)
>DroEre_CAF1 137011 107 - 1
UUAGCUAUUUCUAGAGC-GCUGUGGAAGCCACAAAAUGGCCAGCGACACACCGCCCCAGUUAACUUUGCCUUCAAACAUCAUUUGUCAAGGCAAGC---------ACACAAGGCCAA
...(((........)))-..(((((...)))))...(((((.(((......)))..........((((((((...(((.....))).)))))))).---------......))))). ( -28.80)
>DroYak_CAF1 138097 117 - 1
UUAGCUAUUUCUAGAGCCACAGCGGCAACCACAAAAUGGCCAGCGACACGCCGCCCCAGUUAACUUUGCCUUCAAACAUCAUUUGUCAAGGCAAGCGCAAGCAACACACAAGGCCAA
...............(((.....)))..........(((((.(((......)))....(((....(((((((...(((.....))).)))))))((....)))))......))))). ( -32.10)
>consensus
UUAGCUAUUUCUAGAGC_GCUGUGGAAACCACAAAAUGGCCAGCGACACGCCGCCCCAGUUAACUUUGCCUUCAAACAUCAUUUGUCAAGGCGAGC_________ACACAAGGCCAA
...(((........)))....((((...))))....(((((.(((......)))..........((((((((...(((.....))).))))))))................))))). (-25.60 = -25.40 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:42 2006