Locus 8061

Sequence ID 3R_DroMel_CAF1
Location 21,643,511 – 21,643,607
Length 96
Max. P 0.790110
window12978

overview

Window 8

Location 21,643,511 – 21,643,607
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.78
Mean single sequence MFE -20.18
Consensus MFE -17.92
Energy contribution -17.78
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -1.61
Structure conservation index 0.89
SVM decision value 0.58
SVM RNA-class probability 0.790110
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21643511 96 + 27905053
AAUAUUUGCUGACACUUUAAUGCCAAAGCAAUCUGGCAAGUGUUGAUCGUUCCAACAACUAAAUAAACUACUACUAAAAGUCAGGCCCAGAACCC------------------------C
........(((((.......(((((.(....).)))))(((((((.......)))).)))...................)))))...........------------------------. ( -18.30)
>DroSec_CAF1 132823 96 + 1
AAUAUUUGCUGACACUUUAAUGCCAAAGCAAUCUGGCAAGUGUUGAUCGGUCCAACAACUAAAUAAACUACUACUAAAAGUCAGGCCCAGAACCC------------------------C
........(((((.......(((((.(....).)))))(((((((.......)))).)))...................)))))...........------------------------. ( -18.30)
>DroSim_CAF1 129435 96 + 1
AAUAUUUGCUGACACUUUAAUGCCAAAGCAAUCUGGCAAGUGUUGAUCGGUCCAACAACUAAAUAAACUACUACUAAAAGUCAGGCCCAGAACCC------------------------C
........(((((.......(((((.(....).)))))(((((((.......)))).)))...................)))))...........------------------------. ( -18.30)
>DroEre_CAF1 129559 96 + 1
AAUAUUUGCUGACACUUUAAUGCCAAAGCAAUCUGGCAAGUGUUGAUCGGUCCAACAACUAAAUAAACUACUACUAAAAGUCAGGCCCAGAACCC------------------------C
........(((((.......(((((.(....).)))))(((((((.......)))).)))...................)))))...........------------------------. ( -18.30)
>DroYak_CAF1 130104 96 + 1
AAUAUUUGCUGACACUUUAAUGCCAAAGCAAUCUGGCAAGUGUUGAUCGCUACAACAACUAAAUAAACUACUACUAAAAGUCAGGCCCAGAGCCC------------------------C
........(((((.......(((((.(....).)))))(((((((.......)))).)))...................)))))...........------------------------. ( -17.90)
>DroAna_CAF1 112354 120 + 1
AAUAUUUGCUGACACUUUAAUGCCAAAGCAAUCUGGCAAGUGUUGAUCGCUCCGACAACUAAAUAAACUACUACCGAAAGUCAGGCGCAGGCCCAGGACAACCAAGCAUCUGUGGCCGGC
........(((((.......(((((.(....).)))))...((((.(((...)))))))....................)))))..((.((((((((...........)))).)))).)) ( -30.00)
>consensus
AAUAUUUGCUGACACUUUAAUGCCAAAGCAAUCUGGCAAGUGUUGAUCGGUCCAACAACUAAAUAAACUACUACUAAAAGUCAGGCCCAGAACCC________________________C
........(((((.......(((((........)))))(((((((.......)))).)))...................))))).................................... (-17.92 = -17.78 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:39 2006