Locus 806

Sequence ID 3R_DroMel_CAF1
Location 2,736,437 – 2,736,544
Length 107
Max. P 0.717894
window1288

overview

Window 8

Location 2,736,437 – 2,736,544
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 79.68
Mean single sequence MFE -19.37
Consensus MFE -14.59
Energy contribution -14.27
Covariance contribution -0.32
Combinations/Pair 1.24
Mean z-score -1.57
Structure conservation index 0.75
SVM decision value 0.39
SVM RNA-class probability 0.717894
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2736437 107 - 27905053
ACAUAACAAAUCGAUUAUUAUUAUUAUUCUAAAUUUUUGUGGACUUUCAUCUUAACAAUUCGGAUUAAGCACUGGUAAUCAAUAUGCCGAAAGAUAAUCGGUAAUCU
............((((((((...(((.((..((((.(((.(((......)))))).))))..)).)))....))))))))....((((((.......)))))).... ( -17.70)
>DroEre_CAF1 13401 100 - 1
ACAUAAAAAAUCGAUUAUUA---UUA---UAAAUUUUCUUAGAUUUCUUUUUAAGU-AUUCGGGUUUCAGACUGGCAAUCAAUUUGCCGAAAGAUAAUCGGUAAUCU
.........((((((((((.---...---........((((((......)))))).-.(((.((((...))))(((((.....)))))))).))))))))))..... ( -20.60)
>DroYak_CAF1 12184 100 - 1
ACAUAACAAAUCGGUUAUUA---UGA---AACAUUUU-UAAGAUUUCUAUUUUAUUAAUUCGGGUUUCGCACUGGCAAUCAAUAUGCCGAAAGAUAAUCGGUAAUCU
.........((((((((((.---.((---((((((..-((((((....))))))..)))....)))))....(((((.......)))))...))))))))))..... ( -19.80)
>consensus
ACAUAACAAAUCGAUUAUUA___UUA___UAAAUUUU_UUAGAUUUCUAUUUUAAUAAUUCGGGUUUCGCACUGGCAAUCAAUAUGCCGAAAGAUAAUCGGUAAUCU
.........((((((((((..................((((((......))))))...(((((........))((((.......))))))).))))))))))..... (-14.59 = -14.27 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:40 2006