| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,640,642 – 21,640,738 |
| Length | 96 |
| Max. P | 0.620276 |
| Location | 21,640,642 – 21,640,738 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.76 |
| Mean single sequence MFE | -29.00 |
| Consensus MFE | -17.86 |
| Energy contribution | -18.39 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21640642 96 - 27905053 ---GAAAAAGCUGCGCCAUUAAGCGGGCAA-GUUUGUUACGGCCAACAUAAGAGG-CCAUGGCU-------------------AGAGCCACUAGGCGUAUGCGUAAUAAAAUCAACAACU ---......((((((((..(((((......-)))))....((((.........))-)).((((.-------------------...))))...)))))).)).................. ( -27.50) >DroSec_CAF1 129989 96 - 1 ---GAGAAAGCUCCGCCAUUAAGCGGGCAA-GUUUGUUACGGCCAACAUAAAGGG-CCAUGGCU-------------------AGAGCCACUAGGCGUAUGCGUAAUAAAAUCAACAACU ---..((..((.((((......))))))..-.((((((((((((.........))-))...((.-------------------...(((....)))....)))))))))).))....... ( -30.50) >DroSim_CAF1 126589 96 - 1 ---GAGAAAGCUCCGCCAUUAAGCGGCCAA-GUUUGUUACGGCCAACAUAAAAGG-CCAUGGCU-------------------AGAGCCACUAGGCGUAUGCGUAAUAAAAUCAACAACU ---..((.....((((......))))....-.((((((((((((.........))-))...((.-------------------...(((....)))....)))))))))).))....... ( -26.30) >DroEre_CAF1 122529 96 - 1 ---CACAAAGCUCCGCCAUUAAGCGGGCAA-GUUUGCUAUGGCCAACAUAAAAGG-CCAUUGCU-------------------AGAGCCACUAGGCGUAUGCGUAAUAAAAUCAACAACU ---......((.((((......))))))..-..((((.((((((.........))-)))).((.-------------------...(((....)))....)))))).............. ( -26.40) >DroYak_CAF1 127203 97 - 1 ---UCGAAAGCUCCGUCAUUAAGCGGGCAAUGUUGGUUACGGCCAACAAAAAAGG-CCAUGGCU-------------------AGUACCACUAGGCGUAUGCGUAAUAAAAUCAACAACU ---......((.((((......))))))..((((((((..((((.........))-))(((.((-------------------((.....)))).)))...........))))))))... ( -29.70) >DroAna_CAF1 109534 119 - 1 AAAGAGAAAGCUCUGCCAUUAAGCGGCUAA-GUUUGUUAUGGCCACAAAAAAGGGUUCUUGGCCGCAGCCUUGCUCGGUUUACGGCGCCACUAGGCGUAUGCGUAAUAAAAUCACAAACU ..((((....))))(((.....((((((((-(........((((.(......))))))))))))))(((...))).)))((((((((((....)))))...))))).............. ( -33.60) >consensus ___GAGAAAGCUCCGCCAUUAAGCGGGCAA_GUUUGUUACGGCCAACAUAAAAGG_CCAUGGCU___________________AGAGCCACUAGGCGUAUGCGUAAUAAAAUCAACAACU .........((.((((......))))))....(((((((((((((..............)))).......................(((....))).....))))))))).......... (-17.86 = -18.39 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:33 2006