| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,640,433 – 21,640,535 |
| Length | 102 |
| Max. P | 0.869346 |
| Location | 21,640,433 – 21,640,535 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 96.48 |
| Mean single sequence MFE | -36.00 |
| Consensus MFE | -30.94 |
| Energy contribution | -31.34 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.869346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21640433 102 + 27905053 AGUGACGAGGUCCAUGAACAAGGCCGAGAGUGUGUCCUGGCCG-AAAUACGGACUUUUGCGCCAGGGGACGACUUUGGUAAACAACCGCACUCUGGUCAAAUU ..((((..((.((........)))).(((((((.(((((((((-(((.......))))).))))))).........(((.....)))))))))).)))).... ( -34.90) >DroSec_CAF1 129780 102 + 1 AGUGACGAGGUCCAUGAACGAGGCCGAGAGUGUGUCCUGGUCG-AAAUACGGACUUUUGCGCCAGGGGACGACUUUGGUGAACAACCGCACUCUGGUCAAAUU ..((((..(((((......).)))).((((((((....((((.-.......))))....((((((((.....))))))))......)))))))).)))).... ( -33.90) >DroSim_CAF1 126380 102 + 1 AGUGACGAGGUCCAUGAACGAGGCCGAGAGUGUGUCCUGGCCG-AAAUACGGACUUUUGCGCCAGGGGACGACUUUGGUGAACAACCGCACUCUGGUCAAAUU ..((((..(((((......).)))).(((((((.(((((((((-(((.......))))).))))))).........(((.....)))))))))).)))).... ( -36.60) >DroEre_CAF1 122319 103 + 1 AGUGACGAGGUCCAUGAACAAGGCCGAGAGUGUGUCCUGUCCGUAAAUACGGACUUUUGCGCCAGGGGACGACUUCGGUGAACAACCGCACUCUGGUCAAAUU ..((((..((.((........)))).((((((((....((((((....)))))).....((((..((.....))..))))......)))))))).)))).... ( -36.40) >DroYak_CAF1 126984 102 + 1 AGUGACGAGGUCCAUGAACAAGGCCGAGAGUGUGUCCUGUCCG-AAAUACGGACUUUUGCGCCAGGGGAUGACUUUGGUGAGCAACCGCACUCUGGUCAAAUU ..((((..((.((........)))).((((((((....(((((-.....)))))..(((((((((((.....)))))))..)))).)))))))).)))).... ( -38.20) >consensus AGUGACGAGGUCCAUGAACAAGGCCGAGAGUGUGUCCUGGCCG_AAAUACGGACUUUUGCGCCAGGGGACGACUUUGGUGAACAACCGCACUCUGGUCAAAUU ..((((..((.((........)))).(((((((((((.............)))).....((((((((.....)))))))).......))))))).)))).... (-30.94 = -31.34 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:32 2006