Locus 8054

Sequence ID 3R_DroMel_CAF1
Location 21,633,752 – 21,633,868
Length 116
Max. P 0.907383
window12965

overview

Window 5

Location 21,633,752 – 21,633,868
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.72
Mean single sequence MFE -30.72
Consensus MFE -19.36
Energy contribution -21.24
Covariance contribution 1.88
Combinations/Pair 1.07
Mean z-score -2.31
Structure conservation index 0.63
SVM decision value 1.05
SVM RNA-class probability 0.907383
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21633752 116 - 27905053
UAACAACAAUGGAUGGAUCCCCGUGUUGGACUUUAGCUCAGAGUUUGCUUUGAGUUUGAGUUUUAGUUAAUUUUAUUUGUAUUUUGCAAGUAUUUCUACGCCCCCUACAAAA--AGGG--
...(((((..(((....)))...)))))(((((.(((((((((....))))))))).)))))...((......(((((((.....))))))).....))...((((......--))))-- ( -31.90)
>DroSim_CAF1 119722 116 - 1
UAACAACAAUGGGUGGAUCCCCGUGUUGGACUUUGGCUCAGAGUUUGCUUUGAGUUUGAGUUUUAGUUAAUUUUAUUUGUAUUUUGCAAGUAUUUGUACGCCCCCUACAAAA--AGGG--
...(((((.((((......)))))))))(((((..((((((((....))))))))..)))))...((......(((((((.....))))))).....))...((((......--))))-- ( -34.80)
>DroEre_CAF1 115479 116 - 1
UAACAACAAUGGGUGAAUCCCAGUGUUGGACUUUGGCUCAGAGUUUGCUUUGAGUUUGAGUUUUAGUUAAUUUUAUUUGUAUUCUGCAAGUAUUUGUACGCCCCCUACAAAA--AAGG--
...(((((.((((.....)))).)))))(((((..((((((((....))))))))..)))))...........(((((((.....)))))))((((((.......)))))).--....-- ( -34.00)
>DroYak_CAF1 120185 118 - 1
CAACAACUAUGGGUGGAUCCCUGUGUUGGACUUUGGCUCAGAGUUUGCUUUGAGUUUGAGUUUUAGUUAAUUUUAUUUGUAUUUUGCAAGUAUUUGUACGCCCCCUACAAAAUAAGGG--
...((((...(((.....)))...))))(((((..((((((((....))))))))..)))))...((......(((((((.....))))))).....))...((((........))))-- ( -33.20)
>DroAna_CAF1 102158 94 - 1
------------------UUCGGUUUUGGCCUCCGGCCCUG-----CCAUUGAGUUUGAGUUUUACUUAAUUUUAUUUGUAUUUCGCAAGUAUUUGCACUCCCUC-ACAGAA--AAGGAC
------------------...(((...((((...))))..)-----))...(((((((((.....)))))...(((((((.....))))))).....))))(((.-......--.))).. ( -19.70)
>consensus
UAACAACAAUGGGUGGAUCCCCGUGUUGGACUUUGGCUCAGAGUUUGCUUUGAGUUUGAGUUUUAGUUAAUUUUAUUUGUAUUUUGCAAGUAUUUGUACGCCCCCUACAAAA__AGGG__
..........(((((............((((((.(((((((((....))))))))).))))))..........(((((((.....)))))))......)))))................. (-19.36 = -21.24 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:26 2006