Locus 8051

Sequence ID 3R_DroMel_CAF1
Location 21,628,342 – 21,628,444
Length 102
Max. P 0.941286
window12958

overview

Window 8

Location 21,628,342 – 21,628,444
Length 102
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 93.24
Mean single sequence MFE -14.08
Consensus MFE -13.16
Energy contribution -13.23
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.92
Structure conservation index 0.93
SVM decision value 1.32
SVM RNA-class probability 0.941286
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21628342 102 + 27905053
AAAAAUG--UAGGGUCGGGUGGAAUGGGUGAUAAGGAAGAACCCUACUGAAUGACAUGACUAAAAAUACAUUAAAAA--AAAGGGAAAUUCCAAAACAAAAGAAAU
...((((--((.(((((.((.(...((((...........)))).......).)).))))).....)))))).....--....((.....)).............. ( -15.10)
>DroSec_CAF1 117762 100 + 1
AAAAAUG--UAGGGUCGGGUGGAAUGGGUGAUAAAGAAUAACCCUACUGAAUGACAUGACUAAAAAUACAU-AAAAA--AAAGGA-AAUUCCAAAACAAAAGAAAU
....(((--((.(((((.((.(...((((...........)))).......).)).))))).....)))))-.....--...((.-....)).............. ( -14.40)
>DroSim_CAF1 114306 101 + 1
AAAAAUG--UAGGGUCGGGUGGAAUGGGUGAUAAAGAAGAACCCUACUGAAUGACAUGACUAAAAAUACAU-AAAAA--AAGGGAAAAUUCCAAAACAAAAGAAAU
....(((--((.(((((.((.(...((((...........)))).......).)).))))).....)))))-.....--...(((....))).............. ( -14.80)
>DroEre_CAF1 110001 105 + 1
AAAAAUAUAUAGGGUCGGGUGGAAUGGGCGAUAAAGAAGAACCCUACUGAAUGACAUGACUAAAAAUACAU-AAAAAUAAGAGGAAAAUUCCGAAACAAAAGAAAU
.........(((.((((..(((...(((.............)))..)))..))))....))).........-..........(((....))).............. ( -12.02)
>consensus
AAAAAUG__UAGGGUCGGGUGGAAUGGGUGAUAAAGAAGAACCCUACUGAAUGACAUGACUAAAAAUACAU_AAAAA__AAAGGAAAAUUCCAAAACAAAAGAAAU
.........(((.((((..(((...((((...........))))..)))..))))....)))....................(((....))).............. (-13.16 = -13.23 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:19 2006