Locus 8050

Sequence ID 3R_DroMel_CAF1
Location 21,627,607 – 21,627,717
Length 110
Max. P 0.901968
window12957

overview

Window 7

Location 21,627,607 – 21,627,717
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.47
Mean single sequence MFE -19.67
Consensus MFE -15.74
Energy contribution -16.10
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -2.64
Structure conservation index 0.80
SVM decision value 1.02
SVM RNA-class probability 0.901968
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21627607 110 - 27905053
UUUUUAUUUCCUCAAUUUUUUUGCAA----UUGCCCUUC------AAACCCAUACACAGCUCAAUUAAUUUAUAAUUUAACUGCACAUUGUGCGGUUUAAUUAUGCUCAUUAUUGAGUCA
......................((..----..)).....------.............(((((((.....(((((((.((((((((...)))))))).)))))))......))))))).. ( -20.70)
>DroSec_CAF1 117030 109 - 1
UUUUUAUUUCCUCAAUUUUUUUGCAA----UUGCCCUUC------A-ACCCAUACACAGCUCAAUUAAUUUAUAAUUUAACUGCACAUUGUGCGGUUUAAUUAUGCUCAUUAUGGAGUCA
......................((..----..)).....------.-(((((((...(((...........((((((.((((((((...)))))))).)))))))))...))))).)).. ( -18.50)
>DroSim_CAF1 113572 110 - 1
UUUUUAUUUCCUCAAUUUUUUUGCAA----UUGCCCUUC------AAACCCAUACACAGCUCAAUUAAUUUAUAAUUUAACUGCACAUUGUGCGGUUUAAUUAUGCUCAUUAUGGAGUCA
......................((..----..)).....------..(((((((...(((...........((((((.((((((((...)))))))).)))))))))...))))).)).. ( -18.50)
>DroEre_CAF1 109263 110 - 1
UUUUUAUUUCCUCGAUUUUUUCGCAA----ACUCCCUUC------AGACCCACACACAGCUCAAUUAAUUUAUAAUUUAACUGCACAUUGUGCGGUUUAAUUAUGCUCAUUAUGGAGUCA
............(((.....)))...----.........------.((((((.....(((...........((((((.((((((((...)))))))).))))))))).....))).))). ( -20.40)
>DroYak_CAF1 113818 110 - 1
UUACUAUUUCCUCGAUUUUUUUCCAA----UUGCCCUUU------GGACCCACACACAGCUCAAUUAAUUUAUAAUUUAACUGCACAUUGUGCGGUUUAAUUAUGCUCAUUAUAGAGUCA
.....................(((((----.......))------)))..........((((...((((.(((((((.((((((((...)))))))).)))))))...))))..)))).. ( -21.00)
>DroAna_CAF1 96132 106 - 1
--------------AUUUUUUUUAAAUAUGUUGUCGUUUUGGUCGCGACCCACUCGAUGCUCAAUAAAUUUAUAAUUUAAAUGUACAUUGUGCGGCUUAAUUAUGCCUAUUAUAGAGUUA
--------------..................(((((.......)))))..((((...((.((((..(((((.....)))))....)))).))(((........))).......)))).. ( -18.90)
>consensus
UUUUUAUUUCCUCAAUUUUUUUGCAA____UUGCCCUUC______AGACCCACACACAGCUCAAUUAAUUUAUAAUUUAACUGCACAUUGUGCGGUUUAAUUAUGCUCAUUAUGGAGUCA
..........................................................((((...((((.(((((((.((((((((...)))))))).)))))))...))))..)))).. (-15.74 = -16.10 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:18 2006