Locus 8048

Sequence ID 3R_DroMel_CAF1
Location 21,624,072 – 21,624,165
Length 93
Max. P 0.583952
window12951

overview

Window 1

Location 21,624,072 – 21,624,165
Length 93
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 83.76
Mean single sequence MFE -17.43
Consensus MFE -10.77
Energy contribution -11.69
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -2.65
Structure conservation index 0.62
SVM decision value 0.10
SVM RNA-class probability 0.583952
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21624072 93 - 27905053
CAACCAUUCUGCCACUGGCACUCACUCCACUGUUGGCCAUCCCAAUGGGGAUUCAGA-AUUAAAUCCAACACCAUGGAUCCGCCA-AAAAAAUUU
...............((((.((.(.(((.(((((((.....)))))))))).).)).-.....(((((......)))))..))))-......... ( -20.40)
>DroSec_CAF1 113457 88 - 1
CAACCAUUCUGCCACUGGCAC----UCCACUGUUGGCCAUCCCAAUGGGGAUUCAGA-AUUAAAUCCAACACCAUGGAUCCACCA-AA-AAAUUU
.....((((((((...)))..----(((.(((((((.....))))))))))...)))-))...(((((......)))))......-..-...... ( -18.70)
>DroSim_CAF1 110001 88 - 1
CAACCAUUCUGCCACUGGCAC----UCCACUGUUGGCCAUCCCAAUGGGGAUUCAGA-AUUAAAUCCAACACCAUGGAUCCACCA-AA-AAAUUU
.....((((((((...)))..----(((.(((((((.....))))))))))...)))-))...(((((......)))))......-..-...... ( -18.70)
>DroEre_CAF1 105659 88 - 1
CAACCAUUCUGCCACUGGCAC----UCCACUGUUGGCCAUCCCAAUGGGGAUUCAGA-AUUAAAUCCAACACCAUGGAUCCACCA-AA-AAAUUU
.....((((((((...)))..----(((.(((((((.....))))))))))...)))-))...(((((......)))))......-..-...... ( -18.70)
>DroYak_CAF1 110217 88 - 1
CAACCAUUCCCCCACAGGCAC----UCCACUGUUGGCCAUCCCAUUGGGGAUUCAGA-AUUAAAUCCAACACCAUGGAUCCACCA-AA-AAAUUU
..........((.((((....----....)))).))........(((((((((((..-................))))))).)))-).-...... ( -18.17)
>DroAna_CAF1 92358 82 - 1
CAU-------CCCACUGGCUU----UCCAUUU-UAUGCAGCCCAUCCGGGAUCCCGAAAUUUAAUUCUUCGCUCCAGAUCCACUAUAA-AAAUUU
...-------......((((.----..(((..-.))).))))......(((((.((((.........)))).....))))).......-...... (  -9.90)
>consensus
CAACCAUUCUGCCACUGGCAC____UCCACUGUUGGCCAUCCCAAUGGGGAUUCAGA_AUUAAAUCCAACACCAUGGAUCCACCA_AA_AAAUUU
................((...........(((((((.....)))))))(((((((...................))))))).))........... (-10.77 = -11.69 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:13 2006