Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,623,927 – 21,624,017 |
Length | 90 |
Max. P | 0.753617 |
Location | 21,623,927 – 21,624,017 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -21.07 |
Consensus MFE | -16.31 |
Energy contribution | -16.67 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.64 |
Structure conservation index | 0.77 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21623927 90 + 27905053 GUUCCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAA-----------------AAUCGCAAAGCAA--CCAA ....((((((((...........(((((....)))))((((.......))))..))))))))...(((.....-----------------........)))..--.... ( -20.92) >DroSec_CAF1 113306 90 + 1 GUUCCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAA-----------------AUUCGCAAAGCAA--CCAA ....((((((((...........(((((....)))))((((.......))))..))))))))...(((.....-----------------........)))..--.... ( -20.92) >DroSim_CAF1 109851 90 + 1 GUUCCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAA-----------------AUUCGCAAAGCAA--CCAA ....((((((((...........(((((....)))))((((.......))))..))))))))...(((.....-----------------........)))..--.... ( -20.92) >DroEre_CAF1 105515 85 + 1 GUUUCAGAGGAAAACGCCCCGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAG-----------------AAUCGCAAAACA------- ((((((((((((...........(((((....)))))((((.......))))..))))))))...((......-----------------....)).)))).------- ( -19.90) >DroYak_CAF1 110060 90 + 1 GUUGCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCGAUUCCUUUGUCCGCUGUCAA-----------------AAUCGCAAAACAA--CCAA (((((((.((......))))).......((((((((.((((.......))))(((......))).))))))))-----------------..........)))--)... ( -22.00) >DroAna_CAF1 92199 109 + 1 GUUUGAGAGGCAGCUGCCUCGGAAACUGUUGACAGUUGCCUAAUUAAAAGUCAAUUCCUUUAUCUACCGCCUUGGCCCCAUUCCUCUUUCAGCCACAAUACCUCCCCAA ....(((((((((((((..((....).)..).)))))))))...............................((((...............))))......)))..... ( -21.76) >consensus GUUCCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAA_________________AAUCGCAAAACAA__CCAA ((..((((((((...........(((((....)))))((((.......))))..))))))))...)).......................................... (-16.31 = -16.67 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:12 2006