Locus 8046

Sequence ID 3R_DroMel_CAF1
Location 21,622,478 – 21,622,586
Length 108
Max. P 0.590065
window12949

overview

Window 9

Location 21,622,478 – 21,622,586
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.94
Mean single sequence MFE -36.08
Consensus MFE -24.74
Energy contribution -24.68
Covariance contribution -0.05
Combinations/Pair 1.19
Mean z-score -1.54
Structure conservation index 0.69
SVM decision value 0.11
SVM RNA-class probability 0.590065
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21622478 108 - 27905053
CCUCA-AAG-AAUCUGACGAGUUGCCG-GGCCAA--AAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGCUGG----GGGCAGAAGCCUCAUCAUGGCGU---
.(((.-...-........)))..((((-.((((.--..((((((((((.(((.(....).))).))))))))))))))...........(----((((....)))))....))))..--- ( -34.10)
>DroSim_CAF1 108399 108 - 1
CCUCA-AAG-AAUCUGACGAGUUGCCG-GGCCAA--AAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGCUGG----GGGCAGAAGCCUCAUCAUGGCAU---
.(((.-...-........))).(((((-.((((.--..((((((((((.(((.(....).))).))))))))))))))...........(----((((....)))))....))))).--- ( -34.80)
>DroEre_CAF1 104082 109 - 1
CCCCAAAAG-AAUCUGACGAGUUGCCG-GGCCAA--AAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGGUGG----GGGCUGAAGUCUCAUCAUGGCGU---
(((((..((-.......((......))-.((((.--..((((((((((.(((.(....).))).)))))))))))))).....))..)))----))......(((.......)))..--- ( -34.40)
>DroWil_CAF1 93227 104 - 1
ACUCU-UCCAAUGCUGACGAGUUGCCA-GGGCAAAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAA--AAUGGCAG----AGGCGGAAAC-----AGAGGCAU---
.((((-......(((......((((((-..((.....(((((((((((.(((.(....).))).))))))))))).))..--..))))))----.)))(....)-----))))....--- ( -34.70)
>DroYak_CAF1 108572 112 - 1
CCCCA-AGG-AAGCUGACGAGUUGCCG-GGCCAA--AAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGGUGGCAUGAGGCAGAGGUCUCAUCAUGGCGU---
.....-...-..(((.....((..(((-(((((.--..((((((((((.(((.(....).))).)))))))))))))).....))))..))(((((((....)))))))...)))..--- ( -40.20)
>DroAna_CAF1 90717 110 - 1
UUCCCCAGC-AUGCUGACGAGUUGCCAGGGCAAA--AAUAAAUCAGCUGGGGCGUAGGCACUUGGGUUGAUUUAUGGCAAUGACUGGAGG----AGGCGGCAGCUUCA---UGGCAUCUC
(((((((((-(((((......((((....)))).--.(((((((((((.(((.(....).))).)))))))))))))).))).)))).))----))......(((...---.)))..... ( -38.30)
>consensus
CCCCA_AAG_AAGCUGACGAGUUGCCG_GGCCAA__AAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGGUGG____AGGCAGAAGCCUCAUCAUGGCAU___
......................((((...((((.....((((((((((.(((.(....).))).))))))))))))))................((((....))))......)))).... (-24.74 = -24.68 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:11 2006