| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,621,985 – 21,622,097 |
| Length | 112 |
| Max. P | 0.580892 |
| Location | 21,621,985 – 21,622,097 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.51 |
| Mean single sequence MFE | -30.44 |
| Consensus MFE | -14.50 |
| Energy contribution | -16.54 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21621985 112 + 27905053 AUG-GAAUAUGAGCCUGAGUGGGAAAAACGAAGCCACUGCAGAAUCGGUUACUGAAUAUCAAAGACAAUUUUAGGCUUGAAGUGGCAACAAGAAAACGAGCCUGAGAUUGACG ...-.....(((..((((((((...........))))).)))..)))..................((((((((((((((...((....))......))))))))))))))... ( -32.50) >DroSec_CAF1 111371 112 + 1 AAG-GAAUAUGAGUCUGAGUGGGAAAUACGAAGCCGCUGCAGAAUCGUCUACUGAAUAUCAAAGACAAUUUUAGGCUUGAAGUGGCAACAAGAAAGCGACCCAGAGAUUGACU ..(-(.....((.(((((((((...........))))).)))).))(((..(((((.............)))))((((....((....))...)))))))))........... ( -25.32) >DroSim_CAF1 107907 113 + 1 AAGGGAAUAUGAGUCUGAGUGGGAAAAACGAAGCCACUGCAGAAUCGCCUACUGAAUAUCAAAGACAAUUUUAGGCUUGAAGUGGCAACAAGAAAGCGAGCCUCGGAUUGACU ..(((....(((.(((((((((...........))))).)))).))))))...............(((((..(((((((...((....))......)))))))..)))))... ( -32.50) >DroEre_CAF1 103554 112 + 1 AUG-GAAUAUGAGUUUGUGUGUGAAAUACGAAGCCACUGCUGAAUCGGCUUCCGAAUAUCAAAGACAAUUUUAAGCUUGGAGUGGCAACAAGAAUGCGGGCCUGAGAUUGACU .((-(((..((..(((((((.....)))))))..))..((((...)))))))))...........((((((((.(((((.(.((....))....).))))).))))))))... ( -28.00) >DroYak_CAF1 108059 111 + 1 AAG-GAAUAUGAGUCUGUGUGUGAAAUGCGAAGCCACUGC-AAAUUGGCUUACGAAUUUCAAAGACAAUUUUCGGCUUGGAGUGGCAACAAGAAUGCGAGCCUAAGAUUGACU ...-.......((((.((.(.((((((.((((((((....-....)))))).)).)))))).).))((((((.((((((.(.((....))....).)))))).)))))))))) ( -35.10) >DroAna_CAF1 90320 113 + 1 AUAAAAACAGAAACUUGAGAGUGCAAAACGAUCCCGGUGGAAAAAUGUCUACCGAAUAUCAAAGACAAUCUUGGGAUUCAAGUGGCGAAGGGGACAAGAGGUCCUGAUUGACU .........(..(((((((.((.....))..((((((((((......))))))........(((.....))))))))))))))..)....(((((.....)))))........ ( -29.20) >consensus AAG_GAAUAUGAGUCUGAGUGGGAAAAACGAAGCCACUGCAGAAUCGGCUACCGAAUAUCAAAGACAAUUUUAGGCUUGAAGUGGCAACAAGAAAGCGAGCCUGAGAUUGACU ..........((.((((((((.............)))).)))).))...................((((((((((((((...((....))......))))))))))))))... (-14.50 = -16.54 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:10 2006