Locus 8044

Sequence ID 3R_DroMel_CAF1
Location 21,618,762 – 21,618,880
Length 118
Max. P 0.750547
window12947

overview

Window 7

Location 21,618,762 – 21,618,880
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.57
Mean single sequence MFE -36.57
Consensus MFE -25.89
Energy contribution -27.12
Covariance contribution 1.23
Combinations/Pair 1.18
Mean z-score -2.97
Structure conservation index 0.71
SVM decision value 0.47
SVM RNA-class probability 0.750547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21618762 118 - 27905053
AAAUAUCCAGAGACACAUGCCAAGGCGC--ACAGCCUUUGCAUCUGAAUCUGAAUCUGCCUCUGCAUCUGCAUCUGCAUCUGCAUCUGAAUCUGAAUCGGAUGGAAUCAAGGAGCAGGAA
.......((((..((.((((.(((((..--...))))).)))).))..))))..(((((..(((((..(((....)))..)))((((((.......)))))).......))..))))).. ( -39.50)
>DroSec_CAF1 108165 112 - 1
AAAUAUCUAGAGACACAUGCCAAGGCGC--ACAGCCUUUGCAUCUGAAUCUGAUUCUGCCUCUGCAUCUGC------AUCUGCAUCUGAAUCUGAAUCGGAUGGAAUCAAGGAGCAGGAA
.......((((..((.((((.(((((..--...))))).)))).))..)))).((((((..((((....))------.....(((((((.......)))))))......))..)))))). ( -36.40)
>DroSim_CAF1 102867 106 - 1
AAAUAUCUAGAGACACAUGCCAAGGCGC--ACAGCCUUUGCAUCUGAAUCUGAUUCUGCCUCUGCAUC------------UGCAUCUGAAUCUGAAUCGGAUGGAAUCAAGGAGCAGGAA
.......((((..((.((((.(((((..--...))))).)))).))..)))).((((((..((.....------------(.(((((((.......))))))).)....))..)))))). ( -35.50)
>DroEre_CAF1 100250 118 - 1
AAAUAUCCAGUGACACAUGCCAAGGCGC--ACAGCCUUUGCAUCUGAAUCUGAUUCUGCCUCCGCCUCUGCAUCUGCAUUUGCAUCUGCAUCUGAAUCGGAUGGAAUCAAGGAGCAGAAU
.......(((...((.((((.(((((..--...))))).)))).))...)))(((((((.(((.....(.((((((((..(((....)))..))...)))))).).....)))))))))) ( -39.60)
>DroYak_CAF1 103946 118 - 1
AAAUAUCUAGAGACACAUGCCAAGGCGC--ACAGCCUUUGCAUCUGAAUCUGAUUCUGAUUCUGAUUCUGCCUCUGCAUCUGCAUCUGAAUCUGAAUCGGAUGGAAUCAAGGAGCAGGAA
.......((((..((.((((.(((((..--...))))).)))).))..)))).(((((.((((((((((((....)))....(((((((.......)))))))))))).)))).))))). ( -38.60)
>DroAna_CAF1 87089 101 - 1
AAACAUCCAGAGACACAUGCCGACGUGCUCUCAG-CUUUGCAUCUGAAUCUGGUACUGAGUC------------------UGAAUCUGAAUCUGAUUCGGAUGGAAUCAGGGAGCAGAAA
.........(((((((........))).))))..-.......((((..((((((.((..(((------------------((((((.......))))))))))).))))))...)))).. ( -29.80)
>consensus
AAAUAUCCAGAGACACAUGCCAAGGCGC__ACAGCCUUUGCAUCUGAAUCUGAUUCUGCCUCUGCAUCUGC______AUCUGCAUCUGAAUCUGAAUCGGAUGGAAUCAAGGAGCAGGAA
.......((((..((.((((.(((((.......))))).)))).))..)))).(((((.((((.....(((....)))....(((((((.......))))))).......))))))))). (-25.89 = -27.12 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:09 2006