| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,617,634 – 21,617,725 |
| Length | 91 |
| Max. P | 0.509899 |
| Location | 21,617,634 – 21,617,725 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 87.07 |
| Mean single sequence MFE | -34.67 |
| Consensus MFE | -28.42 |
| Energy contribution | -28.16 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21617634 91 - 27905053 GGAGGCGCAAG--------------GCAGGAGGCAGGUGGCUCCACAACGGUUGGUGGCAGUCGGGCAGUGGGAGAACACAUAGCUGGCUGCGCUGCAUAAUCAG ((((.(((...--------------((.....))..))).)))).....(((((...((((((((.((((.(.......)...)))).))).))))).))))).. ( -35.60) >DroSec_CAF1 107030 91 - 1 GGAGGCGCGGG--------------GCAGGAGGCAGGUGACUCCACAACGGUUGGUGGCAGUCGGGCAGUGGGAAAACACAUAGCUGGCUGCGCUGCAUAAUCAG ......((((.--------------((((..(((...(((((((((........)))).)))))....(((......)))...)))..)))).))))........ ( -34.10) >DroSim_CAF1 101753 91 - 1 GGAGGCACGAG--------------GCAGGAGGCAGGUGACUCCACAACGGUUGGUGGCAGUCGGGCAGUGGGAAAACACAUAGCUGGCUGCGCUGCAUAAUCAG ((((.(((...--------------((.....))..))).)))).....(((((...((((((((.((((.(.......)...)))).))).))))).))))).. ( -32.40) >DroYak_CAF1 102771 105 - 1 GGAGGCUGAAGGCUGGAGGCAGGAGGCUGGAGACAGGAGGCUCCACAACGGUUGCUGGCAGUCGGGCAGUGGGAAAACACAUAGCUGGCUGCGCUGCAUAAUCAG ((((.((.....(((....)))....(((....))).)).)))).....(((((...((((((((.((((.(.......)...)))).))).))))).))))).. ( -36.60) >consensus GGAGGCGCAAG______________GCAGGAGGCAGGUGACUCCACAACGGUUGGUGGCAGUCGGGCAGUGGGAAAACACAUAGCUGGCUGCGCUGCAUAAUCAG ((((.(((............................))).)))).....(((((...((((((((.((((.(.......)...)))).))).))))).))))).. (-28.42 = -28.16 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:08 2006