| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,615,305 – 21,615,414 |
| Length | 109 |
| Max. P | 0.978052 |
| Location | 21,615,305 – 21,615,414 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.30 |
| Mean single sequence MFE | -18.18 |
| Consensus MFE | -6.70 |
| Energy contribution | -6.90 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.37 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21615305 109 - 27905053 UAACUAAAUCAAUCCCCAUCUGUGUUUUCCAAGCAAACAUCUGUUUGCAUUUAUGAGUUUUUUU-------UUUUUAAACCGAAAAUAUAAACAAAGUGAC----UGUAAUCGCAGUCAC ....................(((((((((...((((((....))))))......(.((((....-------.....))))))))))))))......(((((----(((....)))))))) ( -24.50) >DroSec_CAF1 104686 109 - 1 UAACUAAACCAAUCCACAUUUGU-UUUUCUAAGCAAACAUCUGUUUGCAUUUAUGAGUUUUU----------UUUUAAACCGAAAAUAUAAACAAAGUGACAAAGUGUAAUCACAGUAAC ..(((.........(((.(((((-((......((((((....))))))((((.((.((((..----------....)))))).))))..)))))))))).....(((....))))))... ( -19.50) >DroSim_CAF1 98968 104 - 1 CUACUAAACCAAUCUACAUCUGU-UCUUCCAAGCAAACAACUGUUUGCAUUUGCGAGUUUU-----------UUAUAAACCAAAAAUAUAAACAAAGUGAC----UGUAAUCACAGUAAC .((((...............(((-(.......((((((....))))))((((..(.((((.-----------....)))))..))))...))))..((((.----.....)))))))).. ( -14.50) >DroEre_CAF1 96766 88 - 1 UAACUAAUCAA------AUCUGU-UUUUCCAUGCAACCAUCUGUUUGCAUUUAUUAGUUU-----------UUUUUAGCCCAAAAAUAUAAACAAAGUGAC----UGUA----------U ...........------......-......(((((..(((.((((((.((((....(((.-----------.....)))....)))).))))))..)))..----))))----------) ( -8.30) >DroYak_CAF1 100355 108 - 1 UAACUAAUCAA------AUCUGU-U-UUCCAUGCAAACAUCUGUUUGCAUUCAUUUGUUUUCUUUUGGUUGUUUUUAAACCAAAAAUAUAAACAAAGUGAC----UGUAAUCACAGCAAC ...........------...(((-(-....((((((((....))))))))...(((((((..((((((((.......))))))))....)))))))((((.----.....)))))))).. ( -24.10) >consensus UAACUAAACCAAUC__CAUCUGU_UUUUCCAAGCAAACAUCUGUUUGCAUUUAUGAGUUUU__________UUUUUAAACCAAAAAUAUAAACAAAGUGAC____UGUAAUCACAGUAAC ................................((((((....))))))........................................................................ ( -6.70 = -6.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:07 2006