Locus 8041

Sequence ID 3R_DroMel_CAF1
Location 21,615,166 – 21,615,265
Length 99
Max. P 0.911549
window12944

overview

Window 4

Location 21,615,166 – 21,615,265
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 85.13
Mean single sequence MFE -27.95
Consensus MFE -20.69
Energy contribution -21.77
Covariance contribution 1.08
Combinations/Pair 1.08
Mean z-score -2.24
Structure conservation index 0.74
SVM decision value 1.08
SVM RNA-class probability 0.911549
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21615166 99 - 27905053
UUCAGUUGUAAACUGAAAGCUUUUGAGUUAUCAGUGGCUGCUGCUAAUCUGUGUAGCUAAGUUUAACAAUUUUAGUCUGAUUAGGGCAGUCAUGGCAGC
....(((((..(((((.((((....)))).)))))(((((((.((((((......((((((.........))))))..)))))))))))))...))))) ( -30.30)
>DroSec_CAF1 104561 85 - 1
UUCAGUUGUAAACUGAAAGCUUUCAAGUUAUCAGUGGCUGCUGCUGAUCUGUG--------UUUCACAAUUUUAGUCUGAUUAG------CAUGGCAGC
...........(((((.((((....)))).))))).(((((((((((((((((--------...))))..........))))))------)..)))))) ( -23.90)
>DroSim_CAF1 98837 91 - 1
UUCAGUUGUAAACUGAAAGCUUUCAAGUUAUCAGUGGCUGCUGCUGAUCUGUG--------UUUCACAAUUUUAGUCUGAUUAGGGCAGUCAUGGCAGC
....(((((..(((((.((((....)))).)))))(((((((.((((((((((--------...))))..........)))))))))))))...))))) ( -27.70)
>DroEre_CAF1 96627 99 - 1
CUGAGUUGUAAACCGAAAGCUUUUAGGUUAUCAGUGGCUGCUACUGAUCUGUGUAGUUCAGUUUAACAAUUUUAGUCGGAUUAGGGCAGUCAUGGCAGA
(((...........((.((((....)))).)).(((((((((.((((((((..(((...............)))..)))))))))))))))))..))). ( -26.36)
>DroYak_CAF1 100216 99 - 1
CUCGGUUGUAAACUGAAAGCUUUUGAGUUAUCAGUGGCUGCUACUGAUCUGUGUAGUUAAGUCUCACACUUUUAGUCGGAUUAGGGCAGUCAUGGCAGA
....((..(..(((((.((((....)))).)))))(((((((.((((((((.......((((.....)))).....))))))))))))))))..))... ( -31.50)
>consensus
UUCAGUUGUAAACUGAAAGCUUUUAAGUUAUCAGUGGCUGCUGCUGAUCUGUGUAG_U_AGUUUCACAAUUUUAGUCUGAUUAGGGCAGUCAUGGCAGC
....((..(..(((((.((((....)))).)))))(((((((.((((((.............................))))))))))))))..))... (-20.69 = -21.77 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:06 2006