Locus 8040

Sequence ID 3R_DroMel_CAF1
Location 21,613,670 – 21,613,761
Length 91
Max. P 0.988411
window12943

overview

Window 3

Location 21,613,670 – 21,613,761
Length 91
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 94.22
Mean single sequence MFE -24.74
Consensus MFE -23.44
Energy contribution -23.28
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.60
Structure conservation index 0.95
SVM decision value 2.12
SVM RNA-class probability 0.988411
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21613670 91 + 27905053
-UUUCCACGAGUACCAACUCGGUUCAUAAUUCAAAAGCCUCUGACGGCUGGCUUUAAAAUGCCUGCGGCUGUGGCUGCCAUGUUUUAUGUUU
-......(((((....)))))...(((((..((..((((.(.(.(.((.(((........))).)).)).).))))....))..)))))... ( -26.50)
>DroSec_CAF1 103068 90 + 1
--UUCCACGAGUCCCAACUCGGUUCAUAAUUCAAAAGCUUCUGACGGCUGGCUUUAAAAUGCCUGCGGCUGUGGCUGCCAUGUUUUAUGUUU
--.....(((((....)))))...(((((..((..((((....(((((((((........)))...))))))))))....))..)))))... ( -24.00)
>DroSim_CAF1 97340 91 + 1
-UUUCCACCAGUCCCAACUCGGUUCAUAAUUCAAAAGCUUCUGACGGCUGGCUUUAAAAUGCCUGCGGCUGUGGCUGCCAUGUUUUAUGUUU
-.....((((((....))).))).(((((..((..((((....(((((((((........)))...))))))))))....))..)))))... ( -21.10)
>DroEre_CAF1 95117 92 + 1
UUUUCGCCGAGUUCCAACUCGGUUCAUAAUUCAAAAGCUUCUGACGGCUGGCUUUAAAAUGCCUGCGGCUGUGGCUGCCAUGUUUUAUGUUU
.....(((((((....))))))).(((((..((..((((....(((((((((........)))...))))))))))....))..)))))... ( -28.00)
>DroYak_CAF1 98708 92 + 1
UUUUUUUCGAGUCGCAACUUGGUUCAUAAUUCAAAAGCCUCUGACGGCUGGCUUUAAAAUGCCUGCGGCUGUGGCUGCCAUGUUUUAUGUUU
......((((((....))))))..(((((..((..((((.(.(.(.((.(((........))).)).)).).))))....))..)))))... ( -24.10)
>consensus
_UUUCCACGAGUCCCAACUCGGUUCAUAAUUCAAAAGCUUCUGACGGCUGGCUUUAAAAUGCCUGCGGCUGUGGCUGCCAUGUUUUAUGUUU
.......(((((....)))))...(((((..((..((((......))))(((........))).(((((....)))))..))..)))))... (-23.44 = -23.28 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:05 2006