| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,602,041 – 21,602,161 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 21,602,041 – 21,602,161 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.44 |
| Mean single sequence MFE | -35.02 |
| Consensus MFE | -16.27 |
| Energy contribution | -16.50 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.46 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21602041 120 + 27905053 GUCUAUUAAUUUAGUGAGACUGCUUCAUCUGCCAAUGUGCACCGUCAUGGGGCAAAGGACUCUUCAGCAAGGGCGAUAUAAAAGUCCAAAGUCCUCGUUGGCCCAUUAUUGUCUGGCAGU ((((((((...)))).))))........((((((....(((..((.(((((.((((((((((....)...((((.........))))..))))))..))).))))).))))).)))))). ( -32.10) >DroSec_CAF1 91006 120 + 1 UUCUAUUAAUUUAGUCAGACUGCUUCAUUUGCCAAUGUGCACCGUCAUGGGGCAAAGGACUCCUCAACAAGGGCGAUAUAAAAGUCCAGAGUCCUCGUUUGCCCAUAAUAGUCUGGCAGU .............((((((((((..((((....)))).)).........(((((((((((((........((((.........)))).)))))))...)))))).....))))))))... ( -37.80) >DroSim_CAF1 85810 120 + 1 GUCUAUUAAUUUAGUCAGACUGCUUCAUUUGCCAAUGUGCACCGUCAUGGGGCAAAGGACUCUUCAACAAGGGCGAUAUAAAAGUCCACAGUCCUCUUUUGCCCAUAAUAGUCUGGCAGU .............((((((((((..((((....)))).)).........((((((((((((.........((((.........))))..))))))...)))))).....))))))))... ( -34.50) >DroEre_CAF1 81595 120 + 1 GUCCAUUAAUUUAGUGAGACUUCUUGAUCUGCCAGCGUGCACCGUCGUGAGGCAAAGGACUCUUCAGCAAGGGCGAUAUAAAAGUCCAGAGUCCUUGUUGGCCCAUUAUAGACUGGCAGU ((((((((...))))).)))........(((((((((((..(((((....))).(((((((((.......((((.........)))))))))))))...))..)))....).))))))). ( -40.31) >DroWil_CAF1 72576 91 + 1 -----------------------------GUCCACUGGCUACCAUCAUGGGGCUGGGGGCUAUUCAAAAACGGCGAUAAUAGUGUCCAAAAACGACGUUUGCCAAAAAUCGUUUCAACAU -----------------------------((((.(..(((.((.....)))))..)))))...........(((((.....((........)).....)))))................. ( -22.90) >DroYak_CAF1 85866 120 + 1 GUCUGUUAAUUUAUUGCGACUUCUUCGUCUGCCAACGUGCACCGUCGUGAGGCAAAGGACUCUUCAGCAAGGGCGAUACAAAAGUCCAGAGUCCUCGUUGGCCCAUAAUAGACUGGCAGU ..((((((.(((((((.(((......))).(((((((......(((....)))..((((((((.......((((.........)))))))))))))))))))...))))))).)))))). ( -42.51) >consensus GUCUAUUAAUUUAGUGAGACUGCUUCAUCUGCCAAUGUGCACCGUCAUGGGGCAAAGGACUCUUCAACAAGGGCGAUAUAAAAGUCCAGAGUCCUCGUUGGCCCAUAAUAGUCUGGCAGU ............................(((((((((........)))..(((..((((((.........((((.........))))..)))))).....)))..........)))))). (-16.27 = -16.50 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:02 2006