Locus 8036

Sequence ID 3R_DroMel_CAF1
Location 21,595,736 – 21,595,836
Length 100
Max. P 0.579969
window12937

overview

Window 7

Location 21,595,736 – 21,595,836
Length 100
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 78.86
Mean single sequence MFE -31.69
Consensus MFE -21.53
Energy contribution -22.20
Covariance contribution 0.67
Combinations/Pair 1.26
Mean z-score -1.20
Structure conservation index 0.68
SVM decision value 0.09
SVM RNA-class probability 0.579969
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21595736 100 + 27905053
UGGCAUUGCA--CGUGUCUCGUUGUUGUUGGUGAGGGGCGGGAAAACGAGGG---CGGG--AAAGCG-------GGGGGCGUUAAGCGCCCAAGCGAACAAUUGAAAAAUUAAC
.....((((.--(((.(((((((.(((((...............))))).))---))))--)..)))-------..(((((.....)))))..))))..((((....))))... ( -30.96)
>DroSec_CAF1 84445 100 + 1
UGGCAUUGCA--CGUGUCUCGUUGUCGUAGGAGAGGGGCGGAAAAGCGAGGC---CGGG--AAAGCG-------GAGGGCGUUAAGCGCCCAAGCGAACAAUUGAAAAAUUAAC
.....((((.--((.((((((((.((((.........))))...))))))))---))..--......-------..(((((.....)))))..))))..((((....))))... ( -32.00)
>DroSim_CAF1 80143 100 + 1
UGGCAUUGCA--CGUGUCUCGUUGUCGUAGGUGAGGGGCGGAAAAGCGAGGC---CGGG--AAAGCG-------GAGGGCGUUAAGCGCCCAAGCGAACAAUUGAAAAAUUAAC
.....((((.--((.((((((((.((((.........))))...))))))))---))..--......-------..(((((.....)))))..))))..((((....))))... ( -32.00)
>DroEre_CAF1 75051 103 + 1
CGGCACUGCA--CGUGCCUCGUUUUUGUGGAUGGGGGGCGGAAAAGCGUGGG---AGGG--AAAGGGG----GAGAGGGCGUUAAGCGCCCAGGCGAACAAUUGAAAAAUUAAC
(.((.((...--(((.((((((((....)))))))).)))....)).)).).---....--.......----....(((((.....)))))........((((....))))... ( -30.30)
>DroYak_CAF1 79252 112 + 1
UGGCAUUGCACACGUGCCACGCUUUCGUAGGUGAGGGGCGGAAAAGCGUGGGGGCAGGG--AAAGCGGAGAGCGGAGGGCGUUAAGCGCCCAAGCGAACAAUUGAAAAAUUAAC
..((.((((.(((((.((.(.((((((....))))))).))....)))))...))))..--...((.....))...(((((.....)))))..))....((((....))))... ( -34.10)
>DroAna_CAF1 64654 93 + 1
-GGCGUUGCA--CGUGCCACGAGUUU-----UAAGGCCCGGCA--GCG----GGCAGGGGUGACACG-------CAGGCCGUUAAGCGGCCAGGAGAACAAUUGAAAAAUUAAC
-..((((((.--((.(((........-----...))).)))))--)))----.((...(....)..)-------).(((((.....)))))........((((....))))... ( -30.80)
>consensus
UGGCAUUGCA__CGUGCCUCGUUGUCGUAGGUGAGGGGCGGAAAAGCGAGGG___AGGG__AAAGCG_______GAGGGCGUUAAGCGCCCAAGCGAACAAUUGAAAAAUUAAC
.....((((...(((.(((((((......))))))).)))....................................(((((.....)))))..))))................. (-21.53 = -22.20 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:59 2006