Locus 8035

Sequence ID 3R_DroMel_CAF1
Location 21,587,374 – 21,587,465
Length 91
Max. P 0.991405
window12936

overview

Window 6

Location 21,587,374 – 21,587,465
Length 91
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 92.77
Mean single sequence MFE -14.13
Consensus MFE -11.74
Energy contribution -11.46
Covariance contribution -0.28
Combinations/Pair 1.12
Mean z-score -2.29
Structure conservation index 0.83
SVM decision value 2.27
SVM RNA-class probability 0.991405
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21587374 91 - 27905053
CCAAAAGCCAAUGAAAUCAAAUCCACGACACUCCAGUUCAAUUUCGAAUUUCACACCACUUUCAAUCGGACCC--ACACCUGGUUUGAUUGAA
...........((((((.........(((......))).........)))))).......((((((((((((.--......)))))))))))) ( -15.87)
>DroSec_CAF1 76039 91 - 1
CCAAAAGCCAAUGAAAUCAAAUCCACGACACUCCAGUUCAAUUUCGAAUUUCACACCACUUUCAAUCGGACAC--ACACCUGGUUUGAUUGAA
...........((((((.........(((......))).........)))))).......(((((((((((.(--(....))))))))))))) ( -13.87)
>DroSim_CAF1 71298 91 - 1
CCAAAAGCCAAUGGAAUCAAAUCCACGACACUCCAGUUCAAUUUCGAAUUUCACACCACUUUCAAUCGGACAC--ACACCUGGUUUGAUUGAA
...........((((......)))).........(((((......)))))..........(((((((((((.(--(....))))))))))))) ( -15.40)
>DroEre_CAF1 66509 86 - 1
-----AGCCAAUGAAAUCAAAUCCACGACACUCCAAUUCAAUUUCGAAUUUCACACCACUUUCAAUCGGACAC--ACACCUGGACUGAUUGAA
-----.............................(((((......)))))..........(((((((((.((.--.....))..))))))))) ( -10.20)
>DroYak_CAF1 70603 88 - 1
-----AGCCAAUGAAAUCAAAUCCACGACACUUCAAUUCAAUUUCGAAUUUCACACCACUUUCAAUCGGACACACACACCUGGUCUGAUUGAA
-----.............................(((((......)))))..........(((((((((((.((......))))))))))))) ( -15.30)
>consensus
CCAAAAGCCAAUGAAAUCAAAUCCACGACACUCCAGUUCAAUUUCGAAUUUCACACCACUUUCAAUCGGACAC__ACACCUGGUUUGAUUGAA
..................................(((((......)))))..........(((((((((((...........))))))))))) (-11.74 = -11.46 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:58 2006