| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,572,503 – 21,572,600 |
| Length | 97 |
| Max. P | 0.828696 |
| Location | 21,572,503 – 21,572,600 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.90 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -18.38 |
| Energy contribution | -19.30 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21572503 97 - 27905053 UUU-----------G-----------GUGCUCGCCUAAGCCACAUGAAUUAUGGCCAUGUUGGGCAUAACUCAGCGCCCU-GCCAGCUUUGGCAGCUUUUGUUGUCAACGCAUGGCACGC ...-----------(-----------((((..((....))....(((.(((((.((.....)).))))).)))))))).(-((((((.((((((((....)))))))).)).)))))... ( -38.70) >DroVir_CAF1 48900 102 - 1 GUU-----------AGGCAAAAAGGAAGG--CGCC--UGGCAUAUAAAUUACAGCCAAGUUGAGCAUAACUCAGCGC--U-GCCAGCUUUGGCAGCUUUUGUUGUCAACGCAUAGUACGC (((-----------((((...........--.)))--))))..........((((...((((((.....))))))))--)-)...((.((((((((....)))))))).))......... ( -32.60) >DroWil_CAF1 41549 97 - 1 UUU----AUUU---U-----------GUG--GGUUUGUGGCAUAUAAAUUACGAGCAAGUUGGGCAUAACUCACAGC--A-GUCAGCUUUGGCAGCUUUUGUUGUCAACGCAUGGCACGC ...----...(---(-----------(((--((((.(((.(.....((((.......)))).).)))))))))))).--.-((((((.((((((((....)))))))).)).)))).... ( -28.90) >DroMoj_CAF1 47423 106 - 1 GUUAGUU-------GGCCAAAAAGAAAAG--CGCC--UGGCAUAUAAAUUACAGCCAAGUUGGGCAUAACUCAGCGC--U-GCCAGCUUUGGCAGCUUUUGUUGUCAACGCAUAGUACGC ....(((-------(((....((.(((((--(((.--((((............)))).((((((.....))))))))--(-(((......)))))))))).))))))))........... ( -31.00) >DroAna_CAF1 42999 103 - 1 UUU-----------AG----AAGGGAGUGC-GGUUUAAGCCACGUAAAUUAUGGCCAAGUCGGGCAUAACUCAGCGUCCU-GCCAGCUUUGGCAGCUUUUGUUGUCAACGCAUGGCACGC ...-----------..----..((((.(((-(((....))).......(((((.((.....)).)))))....)))))))-((((((.((((((((....)))))))).)).)))).... ( -37.50) >DroPer_CAF1 56512 111 - 1 UUU----UUUCUGUGG----AUGGG-AUGGGAUUGUAAGCCACAUAAAUUACGACCAAGUUGGGCAUAACUCAGGGACCAAAGCAGCUUUGGCAGCUUUUGUUGUCAACGCAUGGCACGC ...----.....(((.----.(((.-.((((.((((..(((.((................)))))))))))))....))).....((.((((((((....)))))))).))....))).. ( -26.69) >consensus UUU___________GG____AA_GG_AUG__CGCCUAAGCCACAUAAAUUACGGCCAAGUUGGGCAUAACUCAGCGC__U_GCCAGCUUUGGCAGCUUUUGUUGUCAACGCAUGGCACGC ..........................................................((((((.....))))))......((((((.((((((((....)))))))).)).)))).... (-18.38 = -19.30 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:51 2006