| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,572,325 – 21,572,423 |
| Length | 98 |
| Max. P | 0.508398 |
| Location | 21,572,325 – 21,572,423 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 91.50 |
| Mean single sequence MFE | -33.00 |
| Consensus MFE | -22.76 |
| Energy contribution | -23.16 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21572325 98 + 27905053 CCUUUUGUG-GGAAAGGUGCAAAAUAAAACGAGGGUUAGGCUGCGGAACCAGGCAAAGUUUCCGGCCCUCAGUU-UGGCAAGUUCUCCUGCGGAAAAGUA ..(((((..-(((((..(((......((((((((((((((((((........))..)))))..))))))).)))-).)))..)).)))..)))))..... ( -28.80) >DroSec_CAF1 60653 98 + 1 CGUUUUGUG-GGAAAGGUGCAAAAUAAAACCAGGGUUAGGCUGCGGAACCAGGCAAAGUUUCCGGCCCUCAGUU-UGGCAAGUUUUCCUGCGGAAAAGUA ..(((((..-((((((.(((.((((..(((....))).(((((.(((((........))))))))))....)))-).)))..))))))..)))))..... ( -31.20) >DroSim_CAF1 55752 98 + 1 CGUUUUGUG-GGAAAGGUGCAAAAUAAAACGAGGGUUAGGCUGCGGAACCAGUCAAAGUUUCCGGCCCUCAGUU-UGGCAAGUUUUCCUGCGGAAAAGUA ..(((((..-((((((.(((......(((((((((((.((..((.((.....))...))..))))))))).)))-).)))..))))))..)))))..... ( -32.70) >DroEre_CAF1 50810 100 + 1 GCUAUUGUGGGGAAAGGUGCAAAAUAAAACGAGGGUCAGGCGGCGGAAGCUGGCAAAGUUUCCGGCCCUCAGUUUUGGGAAGUUUUCCUGCAGAAAAGUA (((.((.(((((((((.(.(....(((((((((((((.(.((((....)))).)...(....)))))))).)))))).).).))))))).)).)).))). ( -36.70) >DroYak_CAF1 54676 98 + 1 CCAUUUGCG-GGCAAGGUGCAAAAUAAAACGAGGGUCAGGCUGCGGAAGCAGGCAAAGUUUCCGGUCCUCAGUU-UGGCAAGUUUUCCUGCAGAAAACUA ...((((((-((.(((.(((......((((((((..(.(.((((....)))).)...(....))..)))).)))-).)))..))).))))))))...... ( -35.60) >consensus CCUUUUGUG_GGAAAGGUGCAAAAUAAAACGAGGGUUAGGCUGCGGAACCAGGCAAAGUUUCCGGCCCUCAGUU_UGGCAAGUUUUCCUGCGGAAAAGUA ..(((((((.((((((.(((.......((((((((((.((..((.............))..))))))))).)))...)))..)))))))))))))..... (-22.76 = -23.16 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:50 2006