Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,568,151 – 21,568,264 |
Length | 113 |
Max. P | 0.731121 |
Location | 21,568,151 – 21,568,264 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.90 |
Mean single sequence MFE | -33.18 |
Consensus MFE | -24.08 |
Energy contribution | -24.08 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.23 |
Mean z-score | -1.40 |
Structure conservation index | 0.73 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.731121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21568151 113 - 27905053 CUU-----AAUUUUUUCCGCAGUUGCCGACCAGCGUCCAGUGAAAAACCAUACUCAAAUCGAAAAGACCACAACGCCCAGUGAGCAGCCGGAUUCCGGCUUUAUUGCACUGGUGGUCA ...-----..........((....)).(((((((((...(((..........................))).))))((((((...((((((...))))))......))))))))))). ( -30.47) >DroVir_CAF1 45188 115 - 1 CUU-GC--ACUUCAAUUCACAGUUGCCGAACGGCGUCCCGUGAAGAACCAAACACACAUCGAUCAAACCACAGCGCCCAGUCCGCAGCCGGACUCGGGCUUCAUAGCGCUUGUGGUUA ...-..--.......(((((...((((....))))....))))).....................(((((((((((((((((((....)))))).))))........)).))))))). ( -36.10) >DroPse_CAF1 51978 118 - 1 AUUCAAACAUCUGCAUCCACAGUUGCCGAGCAGCGUCCAGUGAAAAAUCAAACACAAAUCGAAAAGACCACAGCGCCCAGUCCGCAACCGGAUUCGGGCUUCAUAGCGCUGGUGGUCA .(((.................(((((...))))).....(((..........))).....)))..(((((((((((((((((((....)))))).))))........))).)))))). ( -33.60) >DroMoj_CAF1 43404 108 - 1 ----------UGCCCUCCACAGUUGCCGAGCGGAGUCCAGUGAACAACCAAACGCACAUCGAUCAAACCACAGCGCCCAGCCCGCAGCCGGACUCGGGCUUCAUAGCGCUAGUGGUUA ----------((..((((.(.........).))))..))(((............)))........(((((((((((..((((((.((.....)))))))).....))))).)))))). ( -33.60) >DroAna_CAF1 38586 113 - 1 ACC-----AUUUCUGUCCACAGUUGCCGACCAUCGUCCUGUGAAGAACCAGACCCAAAUCGAACAGACCACUGCGCCCAGCCCACAGCCGGACUCUGGCUUCAUUGCGCUGGUGGUCA ...-----..((((...(((((....((.....))..))))).))))..................(((((((((((.........((((((...)))))).....)))).))))))). ( -31.74) >DroPer_CAF1 52252 118 - 1 AUUCAAACAUCUGCAUCCACAGUUGCCGAGCAGCGUCCAGUGAAAAACCAAACACAAAUCGAAAAGACCACAGCGCCCAGUCCGCAACCGGAUUCGGGCUUCAUAGCGCUGGUGGUCA .(((.................(((((...))))).....(((..........))).....)))..(((((((((((((((((((....)))))).))))........))).)))))). ( -33.60) >consensus AUU_____AUUUCCAUCCACAGUUGCCGAGCAGCGUCCAGUGAAAAACCAAACACAAAUCGAAAAGACCACAGCGCCCAGUCCGCAGCCGGACUCGGGCUUCAUAGCGCUGGUGGUCA .................(((.((((.....)))).....))).......................(((((((((((..((((((.((.....)))))))).....))))).)))))). (-24.08 = -24.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:45 2006