Locus 8028

Sequence ID 3R_DroMel_CAF1
Location 21,567,612 – 21,567,716
Length 104
Max. P 0.923639
window12921

overview

Window 1

Location 21,567,612 – 21,567,716
Length 104
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 90.91
Mean single sequence MFE -21.89
Consensus MFE -19.60
Energy contribution -19.49
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -1.75
Structure conservation index 0.90
SVM decision value 1.16
SVM RNA-class probability 0.923639
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21567612 104 + 27905053
CUCGAGU-UAGCAUUGGUCAUCUAAUUUUCCCAGCGACCAAGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCA-AUCUAAUACGAGGAUAU
((((.((-(.((.((((((................))))))..)))))........................((((((...)))))).-........))))..... ( -22.29)
>DroSec_CAF1 55969 104 + 1
CUCGAGU-UAGCAUUGGUCAUCUAAUUUUCCCAGCGACCAAGCGCAACAAUAAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCA-AUCUAAUACGAGGAUAU
((((.((-(.((.((((((................))))))..)))))........................((((((...)))))).-........))))..... ( -22.29)
>DroSim_CAF1 50518 104 + 1
CUCGAGU-UAGCAUUGGUCAUCUAAUUUUCCCAGCGACCAAGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCA-AUCUAAUACGAGGAUAU
((((.((-(.((.((((((................))))))..)))))........................((((((...)))))).-........))))..... ( -22.29)
>DroEre_CAF1 46098 105 + 1
CUCGAGUUUAGCAUUGGUCAUCCAAUUUUGCCAGCGACCAGGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCA-AUCUAAUACGAGGAUAU
((((......(((((((....)))))...(((........)))))...........................((((((...)))))).-........))))..... ( -21.80)
>DroYak_CAF1 49893 105 + 1
CUCGAGUUUGGCAUUGGUCAUCCAAUUUUCCCAGCGACCAAGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCGGAGGAAUCA-AUCUAAUACGAGGAUAU
((((.(((((((.((((..(.......)..)))).).)))))).............................((((((...)))))).-........))))..... ( -21.70)
>DroAna_CAF1 38139 103 + 1
UCCGUGC-CAGCUUUGGUCU--AAACUUUUCCAGCGACCAAGCGAAAGAAUCAACCAAUUCACAUCUCAUGCGAUUCCAAAGGAAUCAAAUCUAAUACGAGGAUAU
(((..((-..((((.((((.--.............))))))))....((((......)))).........))((((((...)))))).............)))... ( -20.94)
>consensus
CUCGAGU_UAGCAUUGGUCAUCUAAUUUUCCCAGCGACCAAGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCA_AUCUAAUACGAGGAUAU
((((......((.((((((................)))))))).............................((((((...))))))..........))))..... (-19.60 = -19.49 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:44 2006