| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,563,262 – 21,563,359 |
| Length | 97 |
| Max. P | 0.998536 |
| Location | 21,563,262 – 21,563,359 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 79.93 |
| Mean single sequence MFE | -14.23 |
| Consensus MFE | -14.45 |
| Energy contribution | -14.23 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.01 |
| Structure conservation index | 1.02 |
| SVM decision value | 3.13 |
| SVM RNA-class probability | 0.998536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21563262 97 - 27905053 CUUCAAACGCGGCUGUUUGUAAAUGACAUUGAAUAAGCAGGCAGUUUACAUAAAGGCCUACGUAAAACAUUCAAAGAACAUUCAAAACAUUCAAACA ......(((.((((...(((((((....(((......)))...)))))))....))))..))).................................. ( -14.60) >DroSec_CAF1 51592 75 - 1 UUUCAAACGCGGCUGUUUGUAAAUGAUAUUGAAUAAGCAGGCAGUUUACAUAAAGGCCUACGUAAAACAUU----------------------ACCA ......(((.((((...(((((((....(((......)))...)))))))....))))..)))........----------------------.... ( -14.60) >DroSim_CAF1 46281 75 - 1 UUUCAAACGCGGCUGUUUGUAAAUAAUAUUGAAUAAGCAGGCAGUUUGCAUAAAGGCCUACGUAAAACAUU----------------------AACA ......(((.((((...(((((((....(((......)))...)))))))....))))..)))........----------------------.... ( -13.50) >consensus UUUCAAACGCGGCUGUUUGUAAAUGAUAUUGAAUAAGCAGGCAGUUUACAUAAAGGCCUACGUAAAACAUU______________________AACA ......(((.((((...(((((((....(((......)))...)))))))....))))..))).................................. (-14.45 = -14.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:43 2006