| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,548,486 – 21,548,577 |
| Length | 91 |
| Max. P | 0.586080 |
| Location | 21,548,486 – 21,548,577 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 79.44 |
| Mean single sequence MFE | -14.67 |
| Consensus MFE | -10.75 |
| Energy contribution | -10.67 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21548486 91 - 27905053 GUUUAUUGUCAAGUCUCGGCUUUCAU-UAAAAAGGGUUUUAAGGCUUGUCAACA-AACGCCUUUUCUCCACAAUUUC-CCC--CUCCCUUUUCGA-C ((((.(((.(((((((..(..(((..-......)))..)..))))))).))).)-)))...................-...--............-. ( -15.90) >DroPse_CAF1 40009 83 - 1 GUGUAUUGUCAAGUUUUGGCUUUCAU-UAAAAAGGGUUUUAAACCUUGUCAACAGAACGCCUUCU------------CUUCCUCUCCCUCUCACU-C (((....(..(((....(((.(((..-.....(((((.....))))).......))).)))....------------)))...).......))).-. ( -11.94) >DroSec_CAF1 46088 95 - 1 GUUUAUUGUCAAGUCUCGGCUUUCAUUUAAAAAGGGUUUUAAGGUUUGUCAACA-AACGCCUUUUCUCCACAAUUCCUCCCCUCUCUCUUUCCCG-C ....(((((..((....(((.....(((((((....)))))))(((((....))-))))))....))..))))).....................-. ( -12.80) >DroSim_CAF1 40392 93 - 1 GUUUAUUGUCAAGUCUCGGCUUUCAU-UAAAAAGGGUUUUAAGGCUUGUCAACA-AACGCCUUUUCUCCACAAUUCC-CCCCUCUCUCUUUCCCA-C ((((.(((.(((((((..(..(((..-......)))..)..))))))).))).)-)))...................-.................-. ( -15.90) >DroEre_CAF1 36234 79 - 1 GUUUAUUGUCAAGUCUCGGCUUUCAU-UAA-AAGGGUUUUAAGGCUUGUCAACA-AACGCCUUUUCCCG---------------UCCCUUUCGCGCC ((((.(((.(((((((..(..(((..-...-..)))..)..))))))).))).)-)))...........---------------............. ( -15.60) >DroYak_CAF1 39527 86 - 1 GUUUAUUGUCAAGUCUCGGCUUUCAU-UAAAAAGGGUUUUAAGGCUUGUCAACA-AACGCCUUUUCUCCACAAUC---------CCCCCUCCGCAGU ((((.(((.(((((((..(..(((..-......)))..)..))))))).))).)-))).................---------............. ( -15.90) >consensus GUUUAUUGUCAAGUCUCGGCUUUCAU_UAAAAAGGGUUUUAAGGCUUGUCAACA_AACGCCUUUUCUCCACAAUU___CCC__CUCCCUUUCCCA_C (((..(((.(((((((.((((((.........))))))...))))))).)))...)))....................................... (-10.75 = -10.67 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:38 2006