Locus 8023

Sequence ID 3R_DroMel_CAF1
Location 21,547,382 – 21,547,472
Length 90
Max. P 0.994406
window12914

overview

Window 4

Location 21,547,382 – 21,547,472
Length 90
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 73.06
Mean single sequence MFE -35.52
Consensus MFE -19.95
Energy contribution -22.07
Covariance contribution 2.12
Combinations/Pair 1.25
Mean z-score -2.52
Structure conservation index 0.56
SVM decision value 2.48
SVM RNA-class probability 0.994406
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21547382 90 - 27905053
GCUAGCUCCGCAAUUGGGUU------------UGGUUAAGGGAUCGGGAUUUAAUGGAUGG-------ACGUAGGUCCUGGUCCUGAAAGCCCAGCUGUUGCCUGCGAA
((..((...(((.(((((((------------(......((((((((((((((.((.....-------.))))))))))))))))..)))))))).))).))..))... ( -37.90)
>DroSec_CAF1 45002 77 - 1
GCUGGCUCCGCAAUUGGGUU------------UG-------------GAUUUAAAGGAUGG-------ACGCAGGUCCUGGUCCUGAAAGCCCAGCUGUCGCCUGCGAA
((.(((...(((.(((((((------------(.-------------.......(((((((-------((....))))..)))))..)))))))).))).))).))... ( -29.30)
>DroSim_CAF1 39312 90 - 1
GCUGGCUCCGCAAUUGGGUU------------UGGUUUAGGGAUCGGGAUUUAAAGGAUGG-------ACGCAGGUCCUGGUCCUGAAAGCCCAGCUGUUGCCUGCGAA
((.(((...(((.(((((((------------(......(((((((((((((...(.....-------.)..)))))))))))))..)))))))).))).))).))... ( -38.90)
>DroEre_CAF1 35139 90 - 1
GCUGGCUCCGCAAUUGGGUU------------UGCUAUUGGGAUUGGGAUUUAAAGGAUGG-------ACGGAGGUCCUGGUCCUGAAAACCCAGCUGUUGCCUGCGAA
((.(((...(((.(((((((------------(....(..((((..((((((...(.....-------.)..))))))..))))..))))))))).))).))).))... ( -38.80)
>DroYak_CAF1 38357 109 - 1
GCUGGCUCCGCAAUUGGGUUUGGGUUUGAGUUUGGUAUUGGGAUUGGGAUUUAAAGGAUCCCUCCAUCCUGGAGGUCCUGGUACUGAAAACGCAGCUGUUGCCUGCGAA
((.(((...(((.(((.((((..........(..((((..(((((((((((.....))))))(((.....))))))))..))))..))))).))).))).))).))... ( -39.40)
>DroAna_CAF1 26048 80 - 1
GCUUGUCCAGGAAUUGGGCU------------C------AGGAUUGGGAUUUACGG--CGA-------AUGCCAGGCCAAUGCC--AGGGCCCAGCUGUUGCCUGCGAA
.....(((((((((((((((------------(------.((((((((.....)((--(..-------..)))...))))).))--.)))))))...))).)))).)). ( -28.80)
>consensus
GCUGGCUCCGCAAUUGGGUU____________UGGU_U_GGGAUUGGGAUUUAAAGGAUGG_______ACGCAGGUCCUGGUCCUGAAAGCCCAGCUGUUGCCUGCGAA
((.(((...(((.(((((((...................(((((((((((((....................)))))))))))))...))))))).))).))).))... (-19.95 = -22.07 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:37 2006