Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,535,786 – 21,535,892 |
Length | 106 |
Max. P | 0.665923 |
Location | 21,535,786 – 21,535,892 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.19 |
Mean single sequence MFE | -35.35 |
Consensus MFE | -26.52 |
Energy contribution | -27.25 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.20 |
Mean z-score | -1.16 |
Structure conservation index | 0.75 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21535786 106 - 27905053 UUCCAUGAUCUUGA---UCUUUUUAGGAAGCCACACAUGUUCGCCCGAGGAGUUUGCCUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG .....(((((....---(((.....))).((((..((...((((((((....((((....))))))))))))(((((((........)))))))))..)).))))))). ( -35.10) >DroSec_CAF1 33569 106 - 1 UUCCAUGAUCUUUA---UCUUUUUAGGAAGCCAAACGUGUUCGCCCGAGGAGUUUGCUUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG .....(((((..((---(((.....((((..((..(((.(((((((((....((((....))))))))))))).)))..))..))))........)))))...))))). ( -36.12) >DroEre_CAF1 23791 106 - 1 UUCCUUGAUCUCGA---UCUUUUUAGGAAGCUUAACAUGCUCGCCCGAGCAGUUUGCCUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG .....(((((....---(((.....))).((...((((.(((((((((((((.....))))...))))))))(((((((........))))))).).))))))))))). ( -38.30) >DroWil_CAF1 9733 106 - 1 UAUCAUUAUGUAUU---GCUUUUCAGAGACAAAAACAUGUUCGCCCGAAGAGUUUACUUGCAAAUCGGGCGAUGGUCAAUGUAUACCACUUGCCUGGAUGUGUGAUCAG ......(((((.((---((((....))).)))..))))).((((((((.(((....))).....))))))))(((((.(..(((.(((......))))))..)))))). ( -28.40) >DroYak_CAF1 26499 106 - 1 AUCCUUGAUCUUGA---UCUUUUUAGGAGCCCAAACGUGUUCGCCCGAGCAGUUUGCCUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG .....((((((((.---.(((.....)))..))).(((.(((((((((((((.....))))...))))))))).))).(..(((((.........)))))..)))))). ( -39.40) >DroMoj_CAF1 12691 108 - 1 C-CCAACAUCUAUUUGUAUAUUGCAGAGAGCAAAACGUGCUCCCCGGACGAGUUCGCUUGCAAGAGCGGCGAGGGCGAGUGUAUUCCUCUUGCCUGGAUGUGCGAUCAG .-...(((((((...((...((((((.(((((.....)))))..((((....)))).))))))..))((((((((.(((....))))))))))))))))))........ ( -34.80) >consensus UUCCAUGAUCUUGA___UCUUUUUAGGAAGCCAAACAUGUUCGCCCGAGGAGUUUGCCUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG .....(((((.........................(((.(((((((((...((......))...))))))))).))).(..(((.((........)))))..)))))). (-26.52 = -27.25 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:33 2006