Locus 8020

Sequence ID 3R_DroMel_CAF1
Location 21,531,652 – 21,531,744
Length 92
Max. P 0.500000
window12909

overview

Window 9

Location 21,531,652 – 21,531,744
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 85.14
Mean single sequence MFE -33.95
Consensus MFE -26.67
Energy contribution -27.65
Covariance contribution 0.98
Combinations/Pair 1.32
Mean z-score -1.66
Structure conservation index 0.79
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21531652 92 + 27905053
CCGGCGUUUCACUGUACCCAUCUUGAGGUAGUUUUGUGGUUGAGUUGGACGACUGUUCGAUUGUCCGGUGCAUCGGUGCAGUGGGACGCACA
...((((..(((((((((.(((....)))........(((.(..((((((((........))))))))..)))))))))))))..))))... ( -36.50)
>DroSec_CAF1 29445 92 + 1
CCGGCUUUUCACUGUACCCAUCUUGAGGUCGUUUUGUGGUUGAGUUGGACGACUGUUCGAUUGUCCGGUGCAUCGGUGCAGUGGGACGCACA
...((.(..(((((((((((((....(((((....((.(((......))).))....)))))....))))....)))))))))..).))... ( -31.90)
>DroSim_CAF1 20562 92 + 1
CCGGCGUUUCACUGUACCCAUCUUGAGGUAGUUUUGUGGUUGAGUUGGACGACUGUUCGAUUGUCCGGUGCAUCGGUGCAGUGGGACGCACA
...((((..(((((((((.(((....)))........(((.(..((((((((........))))))))..)))))))))))))..))))... ( -36.50)
>DroEre_CAF1 19655 92 + 1
CCGGCGUUUCACUGUACCCAUCUUGAGGUAGUUUCGUGGUUGAGUUGGACAACUGUACGAUAGUCCGGUGCAUCGGUGCAGUGGGAUGCACA
...((((..(((((((((........((.....(((((((((.......)))))..))))....))........)))))))))..))))... ( -33.79)
>DroYak_CAF1 22576 92 + 1
CCGGCGCUUCACUGUACCCAUCUUGAGGUAGUUUUGUGGCUGAAGUGGACGACUGUUUGGUUGUCCGGUGCAUCGGUGCAGUGGGAUGCACA
...(((..((((((((((((((......(((((....)))))....((((((((....))))))))))))....))))))))))..)))... ( -36.20)
>DroAna_CAF1 11651 92 + 1
CCGGCACUUCGCUGUGCGCAAUCUGAGGUAGUUCGGUGGUUGAGACUGGCGACUUGCCAGUCGUCUUGUGGAUCGGUCUUCUGCUAUGCACA
...((((......))))(((....((((..(.((.(..(....(((((((.....)))))))...)..).)).)...)))).....)))... ( -28.80)
>consensus
CCGGCGUUUCACUGUACCCAUCUUGAGGUAGUUUUGUGGUUGAGUUGGACGACUGUUCGAUUGUCCGGUGCAUCGGUGCAGUGGGACGCACA
...(((((((((((((((((((((.((.((......)).)).))..((((((........))))))))))....)))))))))))))))... (-26.67 = -27.65 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:32 2006