Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,722,528 – 2,722,647 |
Length | 119 |
Max. P | 0.918911 |
Location | 2,722,528 – 2,722,647 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.52 |
Mean single sequence MFE | -18.43 |
Consensus MFE | -15.12 |
Energy contribution | -15.43 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.14 |
Mean z-score | -2.79 |
Structure conservation index | 0.82 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2722528 119 + 27905053 -AACGAAACGCUCUAUAAAGUUACAUGUUUUGUAUUAGGCUUGUUUAAAUAUAUAUAUCUACAUAUAAACAUAUGAUACUUUAUAGUUUGCCAUUCCGUCCUCCUUUUUCUUUCUCCUUC -...(((..((.(((((((((..((((((((((((((((..(((........)))..)))).))))))).)))))..)))))))))...))..)))........................ ( -20.80) >DroSec_CAF1 32830 119 + 1 -AACGAAACGCUCUAUAAAGUUACAUGUUUUGUAUUAGGCUUGUUUAAAUAUAUAUAUCUACAUAUAAACAUAUGAUACUUUAUAGUUUGCCAUUCCGUCCUCCUGUUUCUUUCUCCUUC -...(((((((.(((((((((..((((((((((((((((..(((........)))..)))).))))))).)))))..)))))))))...))......(....)..))))).......... ( -22.30) >DroSim_CAF1 33954 119 + 1 -AACGAAACGCUCUAUAAAGUUACAUGUUUUGUAUUAGGCUUGUUUAAAUAUAUAUAUCUACAUAUAAACAUAUGAUACUUUAUAGUUUGCCAUUCCGUCCUCCUUUUUCUUUCUCCUUC -...(((..((.(((((((((..((((((((((((((((..(((........)))..)))).))))))).)))))..)))))))))...))..)))........................ ( -20.80) >DroEre_CAF1 34068 117 + 1 -AACGAAACACUCUAUAAAGUUACAUGUUUUGUAUUAGGCUUGUUUAAACAUAUAUAUCUACAUAUAAACAUAUGAUACUUUAUAGUUUUCCAUCCCGUCCUCCUU--UCUUUCUCCUUC -...((((....(((((((((..((((((((((((((((..(((........)))..)))).))))))).)))))..))))))))).))))...............--............ ( -19.10) >DroYak_CAF1 33878 116 + 1 -AACGAAACACUCUAUAAAGUUACAUGUUUUGUAUUAGGCUUGU-UAAAUAUAUAUAUCUACAUAUAAACAUAUCAUACUUUAUAGUUUUCCAUUCCGUUCUCCUU--UUUUUCUCCUUC -...((((....(((((((((...(((((((((((((((..(((-.......)))..)))).))))))).))))...))))))))).))))...............--............ ( -16.30) >DroAna_CAF1 32284 116 + 1 AAACGGAACGCUCUACAAAGUUACGAGUUUUAUAUUGGGUUUGUUUAAUU--AUAUAUCUACAUAUAAACAUACGAUGCUUUACUAUUUUCUCUCCCAUCCUCUUA--UCCUUCUCUUUC ....(((..(((......)))...(((.((((((((((((.(((......--))).))))).))))))).....((((..................)))))))...--)))......... ( -11.27) >consensus _AACGAAACGCUCUAUAAAGUUACAUGUUUUGUAUUAGGCUUGUUUAAAUAUAUAUAUCUACAUAUAAACAUAUGAUACUUUAUAGUUUGCCAUUCCGUCCUCCUU__UCUUUCUCCUUC ............(((((((((..((((((((((((((((..(((........)))..)))).))))))).)))))..))))))))).................................. (-15.12 = -15.43 + 0.31)
Location | 2,722,528 – 2,722,647 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.52 |
Mean single sequence MFE | -21.77 |
Consensus MFE | -19.36 |
Energy contribution | -19.37 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.30 |
Mean z-score | -1.79 |
Structure conservation index | 0.89 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2722528 119 - 27905053 GAAGGAGAAAGAAAAAGGAGGACGGAAUGGCAAACUAUAAAGUAUCAUAUGUUUAUAUGUAGAUAUAUAUAUUUAAACAAGCCUAAUACAAAACAUGUAACUUUAUAGAGCGUUUCGUU- ....................(((((((((.(...(((((((((......((((((.(((((......))))).)))))).......((((.....))))))))))))).))))))))))- ( -24.90) >DroSec_CAF1 32830 119 - 1 GAAGGAGAAAGAAACAGGAGGACGGAAUGGCAAACUAUAAAGUAUCAUAUGUUUAUAUGUAGAUAUAUAUAUUUAAACAAGCCUAAUACAAAACAUGUAACUUUAUAGAGCGUUUCGUU- ....................(((((((((.(...(((((((((......((((((.(((((......))))).)))))).......((((.....))))))))))))).))))))))))- ( -24.90) >DroSim_CAF1 33954 119 - 1 GAAGGAGAAAGAAAAAGGAGGACGGAAUGGCAAACUAUAAAGUAUCAUAUGUUUAUAUGUAGAUAUAUAUAUUUAAACAAGCCUAAUACAAAACAUGUAACUUUAUAGAGCGUUUCGUU- ....................(((((((((.(...(((((((((......((((((.(((((......))))).)))))).......((((.....))))))))))))).))))))))))- ( -24.90) >DroEre_CAF1 34068 117 - 1 GAAGGAGAAAGA--AAGGAGGACGGGAUGGAAAACUAUAAAGUAUCAUAUGUUUAUAUGUAGAUAUAUAUGUUUAAACAAGCCUAAUACAAAACAUGUAACUUUAUAGAGUGUUUCGUU- ............--......((((..((......(((((((((......((((((.(((((......))))).)))))).......((((.....)))))))))))))...))..))))- ( -20.80) >DroYak_CAF1 33878 116 - 1 GAAGGAGAAAAA--AAGGAGAACGGAAUGGAAAACUAUAAAGUAUGAUAUGUUUAUAUGUAGAUAUAUAUAUUUA-ACAAGCCUAAUACAAAACAUGUAACUUUAUAGAGUGUUUCGUU- ............--......((((((((......(((((((((...(((((((((((((((....)))))))...-..............)))))))).)))))))))...))))))))- ( -20.62) >DroAna_CAF1 32284 116 - 1 GAAAGAGAAGGA--UAAGAGGAUGGGAGAGAAAAUAGUAAAGCAUCGUAUGUUUAUAUGUAGAUAUAU--AAUUAAACAAACCCAAUAUAAAACUCGUAACUUUGUAGAGCGUUCCGUUU ....(.(((.(.--((.((((.((.(((........(.....)...((.((((((..((((....)))--)..)))))).))...........))).)).)))).))...).)))).... ( -14.50) >consensus GAAGGAGAAAGA__AAGGAGGACGGAAUGGAAAACUAUAAAGUAUCAUAUGUUUAUAUGUAGAUAUAUAUAUUUAAACAAGCCUAAUACAAAACAUGUAACUUUAUAGAGCGUUUCGUU_ ....................(((((((((.....(((((((((......((((((.(((((......))))).)))))).......((((.....)))))))))))))..))))))))). (-19.36 = -19.37 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:31 2006