Locus 8019

Sequence ID 3R_DroMel_CAF1
Location 21,517,999 – 21,518,110
Length 111
Max. P 0.786037
window12908

overview

Window 8

Location 21,517,999 – 21,518,110
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.71
Mean single sequence MFE -20.72
Consensus MFE -15.18
Energy contribution -14.98
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -1.86
Structure conservation index 0.73
SVM decision value 0.57
SVM RNA-class probability 0.786037
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21517999 111 + 27905053
AAAUGAAAAUGUUUAACGG-AAAAAAUAAAAUACUCACGUUCC--UCCUAGGCGAACGUGAUUCAAUUUGUUUUGUUGGCUAGAAAACUAAAAUAGGAA------AAGCAAGCCACCAGG
.................((-..((((((((....(((((((((--(....)).)))))))).....))))))))..(((((.(....(((...)))...------...).)))))))... ( -22.10)
>DroVir_CAF1 49540 102 + 1
AAAUGAAAAUGUUUAACGGGCAAAAAUAAAAUACUCACGUUUCUCUCGCAGGCGAACGUGAUUCAAUUUGUUUUGUUGGUUAGAAAACUAAAAUAGCAAAAA------------------
...........((((((.(((((((...((((..((((((((.((.....)).))))))))....)))).))))))).))))))..................------------------ ( -21.60)
>DroWil_CAF1 43746 109 + 1
AAAUGAAAAUGUUUAACGA-AAAAAAUAAAAUACUCACGUUUU--UCCCAAGCGAACGUGAUUCAAUUUGUUUUGUUGGUUAGAAAACUAAAAUACCAAAAGUAGAGGAAAG--------
...........((((((.(-(.((((((((....((((((((.--........)))))))).....)))))))).)).))))))...((....(((.....))).)).....-------- ( -17.10)
>DroMoj_CAF1 51561 102 + 1
AAAUGAAAAUGUUUAACGGGAAAAAAUAAAAUACUCACGUUUCUUUCCCAGGCGAACGUGAUUCAAUUUGUUUUGUUGGUUAGAAAACUAAAAUAGCAAAAA------------------
...((((.((((((..(((((((((((...........)))).)))))).)..))))))..)))).((((((...((((((....))))))...))))))..------------------ ( -22.00)
>DroAna_CAF1 37779 117 + 1
AAAUGAAAAUGUUUAACGA-AAAAAAUAAAAUACUCACGUUUC--UCCCAGGCGAACGUGAUUCAAUUUGUUUUGUUGGUUAGAAAACUAAAACAGCAAAAGCAAAAGCAAGGCUCCAAA
...........((((((.(-(.((((((((....(((((((.(--.(....).)))))))).....)))))))).)).))))))..........(((....((....))...)))..... ( -20.80)
>consensus
AAAUGAAAAUGUUUAACGG_AAAAAAUAAAAUACUCACGUUUC__UCCCAGGCGAACGUGAUUCAAUUUGUUUUGUUGGUUAGAAAACUAAAAUAGCAAAAA___A_G_AAG________
...........((((((.(...((((((((....((((((((...........)))))))).....))))))))..).)))))).................................... (-15.18 = -14.98 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:31 2006