| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,507,814 – 21,507,927 |
| Length | 113 |
| Max. P | 0.643597 |
| Location | 21,507,814 – 21,507,927 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.61 |
| Mean single sequence MFE | -37.38 |
| Consensus MFE | -25.78 |
| Energy contribution | -24.95 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21507814 113 - 27905053 AACAUAUCGAUACUGGCACUGAUCAUGGCCACAGGGUUGGCGAUAUUCUUGCCGGCAAUGGCGGUUCCGGUGUUACGGGUGCCAGGCUCAAAGAUGGCGUACU----AAA--AUUAUAU ..(((...((..(((((((.....((.((((....((((((((.....))))))))..)))).)).(((......))))))))))..))....))).......----...--....... ( -37.20) >DroVir_CAF1 34458 113 - 1 AACAUAUCAAUGCUGGCAUUGAUCAUGGCCACGGGAUUGGCUAUAUUCUUGCCAGCAAUGGCAGUGCCAGUGUUACGGGUGCCGGGCUCGAAGACAGCAAACU----AAA--AACAAAA ........((((((((((((((..(((((((......)))))))..))..((((....)))))))))))))))).(((((.....))))).............----...--....... ( -37.90) >DroGri_CAF1 32407 113 - 1 AACAUAUCAAUGCUGGCGUUGAUCAUCGCCACGGGAUUGGCAAUAUUCUUGCCGGCAAUGGCAGUGCCAGUGUUGCGGGUGCCCGGCUCAAAGACAGCAUACU----GAA--AUAAAUG ......((((((((((((........)))).(((((((.((((((((.((((((....))))))....)))))))).))).))))..........)))))..)----)).--....... ( -37.10) >DroWil_CAF1 31060 113 - 1 AACAUAUCAAUACUGGCAUUGAUCAUGGCCACUGGAUUGGCAAUAUUCUUGCCAGCAAUGGCUGUACCUGUAUUACGGGUGCCAGGCUCAAAGAUGGCAUACU----GUCAGAUCAG-- .....(((....(((((.......(((((((.((..(((((((.....))))))))).)))))))(((((.....)))))))))).......(((((....))----))).)))...-- ( -35.80) >DroMoj_CAF1 37267 113 - 1 AACAUAUCAAUGCUGGCAUUGAUCAUGGCCACGGGAUUGGCUAUAUUCUUGCCGGCAAUGGCAGUGCCUGUGUUACGGGUGCCAGGCUCAAAGACGGCAUACU----AAA--AGGAAAU ..........((((((((..((..(((((((......)))))))..)).)))))))).((((...(((((.....))))))))).(((.......))).....----...--....... ( -37.60) >DroAna_CAF1 28501 117 - 1 AGCAUGUCGAUACUGGCGCUGAUCAUGGCUACGGGAUUGGCGAUGUUCUUUCCAGCGAUGGCGGUGCCUGUGUUUCGGGUGCCUGGCUCGAAGAUGGCGUACUUGAAAAA--AAUAAAU ((.((((((((((.(((((((.((((.(((..((((..(((...)))..))))))).))))))))))).))))(((((((.....)))))))..)))))).)).......--....... ( -38.70) >consensus AACAUAUCAAUACUGGCAUUGAUCAUGGCCACGGGAUUGGCAAUAUUCUUGCCAGCAAUGGCAGUGCCUGUGUUACGGGUGCCAGGCUCAAAGACGGCAUACU____AAA__AUCAAAU ........(((((.((((((((..((.((((......)))).))..))..((((....)))))))))).)))))..(..((((...(.....)..))))..)................. (-25.78 = -24.95 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:24 2006