| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,501,199 – 21,501,293 |
| Length | 94 |
| Max. P | 0.840939 |
| Location | 21,501,199 – 21,501,293 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -19.29 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21501199 94 - 27905053 AAA-----------------GUAUACUCACAGUGCCUCCAGUCGAGUGUUGUGCAAAAAUGUUUCGCCAGAUAACUCCUUAAUGGGAUUACCGACAAGGCGGCUGUAAAAA ...-----------------........(((((((((...(((((((.(((.((...........)))))...))))......((.....))))).)))).)))))..... ( -22.60) >DroPse_CAF1 32835 95 - 1 --A---U--------U---CCCUCACUUACAGUGCCUCCAGUCGAGUGUUGUGCAGAAAUGUUUCUCCAGAUAAUUCCUUAAUGGGAUUGCCGACAAGGCGGCUGUAAAAC --.---.--------.---.......(((((((((((...((((((......(((....)))..)))..(.(((((((.....))))))).)))).)))).)))))))... ( -26.90) >DroWil_CAF1 24740 110 - 1 AAAUGUUUAUAUGUAUGUGUGUGUACUUACAGUGCCUCCAGGUGACUGUUGUGCAGAAAUGUUUCGCCAGAUAAUUCCUUAAUGGGAUUGCCAACGAGGCGGCUGUAAAA- ....((.(((((......))))).))((((((((((((.((....))((((.((.(((....))).......((((((.....))))))))))))))))).)))))))..- ( -32.70) >DroMoj_CAF1 27872 99 - 1 ---GCA---------UUUCUUUUUACUUACAGUGCCUCCAGGUGUGUGUUGUGCAUAAAUGUUUCGCCAGAUAAUUCCUUAAUGGGAUUGCCAAUGAGGCGGCUGUAAAAC ---...---------...........((((((((((((..((((.(..((.......))..)..)))).(.(((((((.....))))))).)...))))).)))))))... ( -28.40) >DroAna_CAF1 21660 99 - 1 AAG---U--------U-GGCUUAUACUUACAGGGCUUCCAAUCUGGAAUUGUGCAGAAAUGUUUCUCCAGAUAACUCCUUAAUGGGAUUACCAACGAGGCGGCUGUAAAAC ...---.--------.-.........((((((.(((((..(((((((.....(((....)))...)))))))...((((....))))........)))))..))))))... ( -27.00) >DroPer_CAF1 33087 95 - 1 --A---U--------U---CCCUCACUUACAGUGCCUCCAGUCGAGUGUUGUGCAGAAAUGUUUCUCCAGAUAAUUCCUUAAUGGGAUUGCCGACAAGGCGGCUGUAAAAC --.---.--------.---.......(((((((((((...((((((......(((....)))..)))..(.(((((((.....))))))).)))).)))).)))))))... ( -26.90) >consensus __A___U________U___CCUUUACUUACAGUGCCUCCAGUCGAGUGUUGUGCAGAAAUGUUUCGCCAGAUAAUUCCUUAAUGGGAUUGCCAACAAGGCGGCUGUAAAAC ..........................(((((((((((...((((........(((....))).........(((((((.....))))))).)))).)))).)))))))... (-19.29 = -19.98 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:23 2006