| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,499,911 – 21,500,001 |
| Length | 90 |
| Max. P | 0.509764 |
| Location | 21,499,911 – 21,500,001 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.02 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -11.38 |
| Energy contribution | -11.80 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21499911 90 + 27905053 CGCCAUGCUUUUUCGCUCCUUGCACGUAGCGCACAAAAACCAACUAGGGGGCAUUUAUUUGUCAUUUUCUUAAAUGCGCAAUGACCAC----------CA .((...((......)).....)).(((.(((((......((......))((((......))))...........))))).))).....----------.. ( -17.10) >DroSec_CAF1 19548 82 + 1 -------AUUUUUCGCUCCUUGCACGUAGCGCACAAAACCCAACUAGG-GGCAUUUAUUUGUCAUUUUCUUAAAUGCGCAAUGACCAC----------CA -------.......((.....)).(((.(((((.....(((.....))-)(((......)))............))))).))).....----------.. ( -16.70) >DroSim_CAF1 19652 82 + 1 -------AAUUUUCGCUCCUUGCACGUAGCGCACAAAACCCAACUAGG-GGCAUUUAUUUGUCAUUUUCUUAAAUGCGCAAUGACCAC----------CA -------.......((.....)).(((.(((((.....(((.....))-)(((......)))............))))).))).....----------.. ( -16.70) >DroEre_CAF1 19826 88 + 1 CGCCAUGGUUUUGCGCUCCUUGCACGUAGCGCACAA-GCACAACUAGG-GACAUUUAUUUGUCAUUUUCUUAAAUGCGCAAUGACCGC----------CA ......((((((((((.(((.....((.((......-))))....)))-((((......))))............)))))).))))..----------.. ( -22.80) >DroYak_CAF1 20149 87 + 1 CGUCAUGGUUUU-UGCUUCUUGCACGUAGCACAGAA-ACACAACUAGU-GGCAUUUAUUUGUGAUUUUCUUAAAUGCGCAAUGACCGC----------CA ......((((.(-((((((((((.....))).))))-.(((.....))-)(((((((.............))))))))))).))))..----------.. ( -21.72) >DroPer_CAF1 31747 98 + 1 CGUCACAUUUCCACGUACCCUGCACGUAGCGCACUAA-CACCACUGCA-GGCAUUUAUUUGCCAUAUUCUUAAAUGCGCAUUGACCGCUCUGCCAACCCA .((((.......((((.......)))).(((((....-((....))..-((((......))))...........)))))..))))............... ( -18.00) >consensus CG_CAUGAUUUUUCGCUCCUUGCACGUAGCGCACAAAACACAACUAGG_GGCAUUUAUUUGUCAUUUUCUUAAAUGCGCAAUGACCAC__________CA ..............((.....)).(((.(((((......((.....)).((((......))))...........))))).)))................. (-11.38 = -11.80 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:22 2006