| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,489,876 – 21,489,969 |
| Length | 93 |
| Max. P | 0.583524 |
| Location | 21,489,876 – 21,489,969 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 81.92 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -14.67 |
| Energy contribution | -14.89 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21489876 93 + 27905053 AUUGCGAAACAGAGCUGCUACAAUGCAAGAACAAAAUGCGCUUGCUGAUGGAUGACAUUGAGCUGGAGCAGCAACAUCAACAGCAGACCAAUA .((((........((((((.((..(((((..(.....)..))))).((((.....))))....)).))))))..........))))....... ( -21.27) >DroVir_CAF1 12231 87 + 1 AUUGUGAGACAGAGCUUCUACAGUGCAAGAAUAAAAUGCGUUUGCUCAUGGAUGACAUUGAGCUGGAGCAGC------AGCAGCAGAGCAAUA (((((........(((((......(((.........)))....(((((((.....)).))))).))))).((------....))...))))). ( -19.20) >DroGri_CAF1 11568 87 + 1 ACUGCGAGACAGAGUUGCUGCAGUGUAAGAACAAAAUGCGUUUGCUCAUGGAUGAUAUUGAGCUGGAGCAGC------AGCAACAGAACAAUA .(((.....))).((((((((.((......))....(((....(((((..........)))))....)))))------))))))......... ( -27.00) >DroMoj_CAF1 12483 87 + 1 AUUGUGAGACUGAACUGCUGCAGUGCAAAAACAAAAUGCGUUUGCUGAUGGACGACAUUGAACUGGAACAGC------AGCAGCAGAACAACA .((((....(((..(((((((.((......))..(((((((((......))))).))))...........))------)))))))).)))).. ( -22.50) >DroAna_CAF1 9261 93 + 1 ACUGUGAGACGGAACUGCUGCAAUGCAAGAAUAAAAUGCGACUGCUGAUGGAUGAUAUAGAGAUGGAGCAGCAGCAGCAACAGCAAAGCAACA .(((.....)))...(((((....(((.........)))(.((((((.((..(.((......)).)..)).)))))))..)))))........ ( -18.20) >DroPer_CAF1 17676 93 + 1 ACUGUGAGACAGAGCUGCUGCAGUGUAAGAACAAAAUGCGCCUGCUGAUGGAUGACAUAGAGCUGGAGCAGCAACAGCAGCAGCAGAACAAUC .(((.....))).((((((((.((......))....(((.((.(((.(((.....)))..))).)).)))......))))))))......... ( -32.30) >consensus ACUGUGAGACAGAGCUGCUGCAGUGCAAGAACAAAAUGCGUUUGCUGAUGGAUGACAUUGAGCUGGAGCAGC______AGCAGCAGAACAAUA .((((........((((((.(((((((((..(.....)..)))))..(((.....)))...)))).)))))).......)))).......... (-14.67 = -14.89 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:21 2006