Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,486,280 – 21,486,370 |
Length | 90 |
Max. P | 0.905765 |
Location | 21,486,280 – 21,486,370 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 77.40 |
Mean single sequence MFE | -37.04 |
Consensus MFE | -19.22 |
Energy contribution | -20.06 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.21 |
Mean z-score | -2.14 |
Structure conservation index | 0.52 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21486280 90 - 27905053 CCGUGAACGCCAGGGAUACGGCGGGACGCAAAUCCACACCAUUGCAUUUCGCAGCGGGUAAGU-GA------GAUGCGAUGCGGUUAGAUCCCAUCC--------- .((....))...(((((..(((.(((......)))...((((((((((((((.........))-))------))))))))).))))..)))))....--------- ( -30.50) >DroSec_CAF1 6010 90 - 1 CCGUGAACGCCAGGGAUACGGCGGGACGCAAGUCCACGCCAUUGCAUUUCGCAGCGGGUAAGU-GA------GAUGCGAUGCGGUUAGAUCCCAUCC--------- .((....))...(((((..((((((((....)))).))))((((((((((((.........))-))------))))))))........)))))....--------- ( -41.20) >DroSim_CAF1 6017 90 - 1 CCGUGAACGCCAGGGAUACGGCGGGACGCAAGUCCACGCCAUUGCAUUUCGCAGCGGGUAAGU-GA------GAUGCGAUGCGGUUAGAUCCCAUCC--------- .((....))...(((((..((((((((....)))).))))((((((((((((.........))-))------))))))))........)))))....--------- ( -41.20) >DroEre_CAF1 6127 93 - 1 CCGUGAACGCCAGGGAUACGGCGGGACGCAAGUCCACGCCAUUGCAUUUCGCAGCGGGUAAGUUGU------GAUUU-----GCUGUGAUGCCAU--UCUAUUCUC .((....))...((.((((((((((((....)))).))))...(((..(((((((......)))))------))..)-----)).)).)).))..--......... ( -37.50) >DroAna_CAF1 5784 90 - 1 CCGUGAAUGCCCGGGACACGGCUGGUCGCAAGUCCACGCCUCUCCACUUUGCAGCGGGUAAGU-GUCCCCAGGAUGCG-----U-CAGGAUGCACGA--------- .(((.....((.(((((((((((((.(....).))).)))..(((.((....)).)))...))-)))))..))..(((-----(-....))))))).--------- ( -34.80) >consensus CCGUGAACGCCAGGGAUACGGCGGGACGCAAGUCCACGCCAUUGCAUUUCGCAGCGGGUAAGU_GA______GAUGCGAUGCGGUUAGAUCCCAUCC_________ .((....))...(((((..((((((((....)))).)))).((((.....))))..................................)))))............. (-19.22 = -20.06 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:18 2006