| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,479,789 – 21,479,900 |
| Length | 111 |
| Max. P | 0.746427 |
| Location | 21,479,789 – 21,479,900 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.80 |
| Mean single sequence MFE | -37.85 |
| Consensus MFE | -22.56 |
| Energy contribution | -20.59 |
| Covariance contribution | -1.97 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21479789 111 + 27905053 UUCUGUGGCUGUCGAUGGU----UG--CGCUGCUGGUUGGCCAGCGAGUUGAGCAGCGUCUGGUUGGUGUCCACCGAGGAGUAGCUAUUGCUGUUCGACACCGGCGACA---UGUCAUUG ....((((((((((.((((----..--...((((((....)))))).(((((((((((..((((((...(((.....))).)))))).))))))))))))))).)))))---.))))).. ( -47.90) >DroVir_CAF1 3403 101 + 1 GGUUG-------------CUGCCU---CCACGCUGAUUAACCAUCGAGUUGAGUAGCGUUUGAUUUGUAUCCACCGAAGAGUAGCUAUUGCUAUUCGAAAUGGGUGACA---UAUCAUUG (((..-------------..))).---..((((((.(((((......))))).)))))).((((.((((((((.....(((((((....)))))))....))))).)))---.))))... ( -32.10) >DroSim_CAF1 5398 111 + 1 UUCUGUUGCUGUCGAUGGU----UG--CGCUGCUGGUUGGCCAGCGAAUUGAGCAGCGUCUGGUUGGUGUCCACCGAGGAGUAGCUAUUGCUGUUCGACACCGGCGACA---UGUCAUUG ...((((((((......((----((--(..((((((....))))))......)))))(((...(((((....))))).(((((((....))))))))))..))))))))---........ ( -39.80) >DroEre_CAF1 5258 111 + 1 UUCUGUUGCUGUCGAUGGU----UG--CGCUGCUGGUUGGCCAGCGAGUUGAGCAGCGUCUGGUUGGUGUCCACCGAGGAGUAGCUAUUGCUGUUCGACACCGGCGACA---UGUCAUUG .......(((((((.((((----..--...((((((....)))))).(((((((((((..((((((...(((.....))).)))))).))))))))))))))).)))))---.))..... ( -42.90) >DroWil_CAF1 7589 114 + 1 GGUUGUCUUUGACGUUGGC----UU--CUCUGAUGAUUGGCAAUUGAAUUGAGCAGCGUUUGAUUGGUAUCCACUGAGGAAUAGCUAUUGCUAUUCGAUAUUGGUGACAAUAGAUCAUUG .((((((...(((((((((----(.--.((....))..)))..((.....)).)))))))..((..((((((.....)(((((((....))))))))))))..))))))))......... ( -29.80) >DroMoj_CAF1 3459 116 + 1 GGCUGUGGCUC-UGACUGGUGCCAGCACUGCGUUGAUUGGAAAUGGAGUUCAAUAGCGUUUGAUUCGUAUCAACCGAGGAGUAGCUGUUGCUAUUCGAUAUUGGUGACA---UAUCAUUG .((((((((.(-(....)).))).(.(((.((((.......)))).))).).)))))(.(((((....))))).)...(((((((....)))))))(((((.(....))---)))).... ( -34.60) >consensus GGCUGUGGCUGUCGAUGGU____UG__CGCUGCUGAUUGGCCAGCGAGUUGAGCAGCGUCUGAUUGGUAUCCACCGAGGAGUAGCUAUUGCUAUUCGACACCGGCGACA___UAUCAUUG ...............................((((.((((........)))).))))(((..(((((((((.......(((((((....)))))))))))))))))))............ (-22.56 = -20.59 + -1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:17 2006