Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,722,028 – 2,722,138 |
Length | 110 |
Max. P | 0.945043 |
Location | 2,722,028 – 2,722,138 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -14.90 |
Consensus MFE | -13.63 |
Energy contribution | -13.97 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.81 |
Structure conservation index | 0.91 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2722028 110 + 27905053 CAUUUGUAAUUUAGUUAUAAUUUUCUUUAUGCUUUCCGCUUUGCAGCCCUUUCACUGCAUUCUCCGUUCUCUUCUUUACACUAAAGUUUAAAUUUUAUUUACAACAAAUU .((((((.....(((...(((((.(((((.((.....))..(((((........)))))......................)))))...)))))..)))....)))))). ( -11.70) >DroSec_CAF1 32337 110 + 1 CAUUUGUAAUUUAGUUAUAAUUUUCUUUAUGCUUUCGGCUUUGCAGCCCUUUCGCUGCAUUCUCCGUUCUCUUCUUUACACUAAAGUUUAAAUUUUAUUUACAACAAAUU .(((((...(((((((((((......)))))....(((...((((((......))))))....))).............))))))...)))))................. ( -17.40) >DroSim_CAF1 33461 110 + 1 CAUUUGUAAUUUAGUUAUAAUUUUCUUUAUGCUUUCCGCUUUGCAGCUCAUUCGCUGCAUUCUCCGUUCUCUUCUUUACACUAAAGUUUAAAUUUUAUUUACAACAAAUU .((((((.....(((...(((((.(((((.((.....))..((((((......))))))......................)))))...)))))..)))....)))))). ( -15.60) >consensus CAUUUGUAAUUUAGUUAUAAUUUUCUUUAUGCUUUCCGCUUUGCAGCCCUUUCGCUGCAUUCUCCGUUCUCUUCUUUACACUAAAGUUUAAAUUUUAUUUACAACAAAUU .((((((.....(((...(((((.(((((.((.....))..((((((......))))))......................)))))...)))))..)))....)))))). (-13.63 = -13.97 + 0.33)
Location | 2,722,028 – 2,722,138 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -18.63 |
Consensus MFE | -17.49 |
Energy contribution | -17.27 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.53 |
Structure conservation index | 0.94 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2722028 110 - 27905053 AAUUUGUUGUAAAUAAAAUUUAAACUUUAGUGUAAAGAAGAGAACGGAGAAUGCAGUGAAAGGGCUGCAAAGCGGAAAGCAUAAAGAAAAUUAUAACUAAAUUACAAAUG ((((((((((((............((((........))))...........((((((......))))))..((.....))..........))))))).)))))....... ( -16.00) >DroSec_CAF1 32337 110 - 1 AAUUUGUUGUAAAUAAAAUUUAAACUUUAGUGUAAAGAAGAGAACGGAGAAUGCAGCGAAAGGGCUGCAAAGCCGAAAGCAUAAAGAAAAUUAUAACUAAAUUACAAAUG ((((((((((((............((((........))))....(((....((((((......))))))...)))...............))))))).)))))....... ( -21.10) >DroSim_CAF1 33461 110 - 1 AAUUUGUUGUAAAUAAAAUUUAAACUUUAGUGUAAAGAAGAGAACGGAGAAUGCAGCGAAUGAGCUGCAAAGCGGAAAGCAUAAAGAAAAUUAUAACUAAAUUACAAAUG ((((((((((((............((((........))))...........((((((......))))))..((.....))..........))))))).)))))....... ( -18.80) >consensus AAUUUGUUGUAAAUAAAAUUUAAACUUUAGUGUAAAGAAGAGAACGGAGAAUGCAGCGAAAGGGCUGCAAAGCGGAAAGCAUAAAGAAAAUUAUAACUAAAUUACAAAUG ((((((((((((............((((........))))...........((((((......))))))..((.....))..........))))))).)))))....... (-17.49 = -17.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:29 2006