Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,477,120 – 21,477,230 |
Length | 110 |
Max. P | 0.980806 |
Location | 21,477,120 – 21,477,230 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -33.94 |
Consensus MFE | -32.38 |
Energy contribution | -32.82 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.55 |
Structure conservation index | 0.95 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21477120 110 + 27905053 ----------AAAACGUCACCUGAUGUAGGCCGUGCCCAGUGCUUAUUUGUUGCAUUUUCGAAAUACAAAUUGCACUAGUCCCGGCCUGCAAUGAGUGUCGCAGUCGACGAUCUACACAG ----------....((((..(((.(((((((((.(.(.(((((..((((((..(......)....)))))).))))).).).)))))))))..(.....).)))..)))).......... ( -35.10) >DroVir_CAF1 1700 100 + 1 ----------AAAACGUCACCUGAUGUAGGUCGUGCCUGGUGCUUAUUUGUUGUUAUGCGAAAAUCCAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCGCAGCCAACG---------- ----------....((.((((...(((((((((.(.(((((((..((((((((.....))).....))))).))))))).).)))))))))..).))).)).........---------- ( -33.80) >DroGri_CAF1 1881 109 + 1 ----------AAAACGUCACCUGAUGUAGGUCGUGCCUGGUGCUUAUUUGUUGUUAUGUGAAAAUACAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCGCAAACAACAAACAACA-AC ----------....((.((((...(((((((((.(.(((((((..((((((.(((.......))))))))).))))))).).)))))))))..).))).))................-.. ( -35.30) >DroWil_CAF1 5218 110 + 1 UAUCUUUAAAAAUACGUCACAUGAUGUAGACCGUGCCUGGUGCUUAUUUGUUGCUAUUUAAAUAUACAAAUUGCACUAGUCCCGGCCUGCAGUAAGUGUCGCAAACAACU---------- ..............((.(((.((.(((((.(((.(.(((((((..((((((..............)))))).))))))).).))).))))).)).))).)).........---------- ( -30.64) >DroMoj_CAF1 1673 100 + 1 ----------AAAACGUCACCUGAUGUAGGUCGUGCCUGGUGCUUAUUUGUUGUUAUGCGAAAAUACAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCGCAAACAACG---------- ----------....((.((((...(((((((((.(.(((((((..((((((.(((.......))))))))).))))))).).)))))))))..).))).)).........---------- ( -35.30) >DroAna_CAF1 2366 109 + 1 ----------AAAACGUCACCUGAUGUAGGCCGUGCCCGGUGCUUAUUUGUUAC-UUUUGGAAAUACAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCAAAGGCAGCUAUCUUCACUG ----------...(((((....)))))((((((.(.(..((((..((((((...-..........)))))).))))..).).)))))).((((((((((.....)))......))))))) ( -33.52) >consensus __________AAAACGUCACCUGAUGUAGGCCGUGCCUGGUGCUUAUUUGUUGCUAUGUGAAAAUACAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCGCAAACAACG__________ ..............((.(((....(((((((((.(.(((((((..((((((..............)))))).))))))).).)))))))))....))).))................... (-32.38 = -32.82 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:16 2006