Locus 8006

Sequence ID 3R_DroMel_CAF1
Location 21,470,376 – 21,470,472
Length 96
Max. P 0.947243
window12887

overview

Window 7

Location 21,470,376 – 21,470,472
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 94.97
Mean single sequence MFE -31.00
Consensus MFE -27.34
Energy contribution -27.59
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -1.87
Structure conservation index 0.88
SVM decision value 1.37
SVM RNA-class probability 0.947243
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21470376 96 - 27905053
AUGGCAGCCAGGGAUAAGUGAACGGGAAUGGUCAUGGAUGGCCAUGACUUCCAGACAAAAACCGUUUGCAUUUCCCAUUGUUGA--UGUACUUGUUGC
...(((((..((((...(..(((((....((((((((....))))))))............)))))..)...))))...((...--...))..))))) ( -31.29)
>DroSec_CAF1 77156 96 - 1
AUGGCAGCCAGGGAUAAGUGAACGGGAAUGGUCAUGGAUGGCCAUGACUUCCAGCCAAAAACCGUUUGCAUUUCCCAUUGUUGA--UGUACUUGUUGC
...(((((..((((...(..(((((....((((((((....))))))))............)))))..)...))))...((...--...))..))))) ( -31.29)
>DroSim_CAF1 62308 96 - 1
AUGGCAGCCAGGGAUAAGUGAACGGGAAUGGUCAUGGAUGGCCAUGACUUCCAGCCAAAAACCGUUUGCAUUUCCCAUUGUUGA--UGUACUUGUUGC
...(((((..((((...(..(((((....((((((((....))))))))............)))))..)...))))...((...--...))..))))) ( -31.29)
>DroEre_CAF1 78306 96 - 1
AUGGCGGCCAGGGAUAAGUGAACGGGAAUGGUCAUGGAUGGCCAUGACUUCCAGCCAAAAACCGUUUGCAUCUCCCAUUGUUGA--UGUACUUGCUGC
...(((((..((((...(..(((((....((((((((....))))))))............)))))..)...))))...((...--...))..))))) ( -32.29)
>DroYak_CAF1 68891 96 - 1
AUGGCAGCCAGGGAUAAGUGAACGGGAAUGGUCAUGGAUGGCCAUGAGUUCCAGCCAAAAACCGUUUGCAUUUCCCAUUGUUGA--UGUACUUGUUGC
...(((((..((((...(..(((((...(((((((((....))))).......))))....)))))..)...))))...((...--...))..))))) ( -30.01)
>DroAna_CAF1 156425 97 - 1
AAGGCAGCGAGGGAUAAGUGAACGGGAAUGGUCAUGGAUGGCCAUGACUUCCAGCCAAAAACAGUUUGCAUCUACUAUUGUUGACUUGUAA-UGUUGC
...((((((....((((((.(((((((..((((((((....))))))))))).((.(((.....))))).........)))).))))))..-)))))) ( -29.80)
>consensus
AUGGCAGCCAGGGAUAAGUGAACGGGAAUGGUCAUGGAUGGCCAUGACUUCCAGCCAAAAACCGUUUGCAUUUCCCAUUGUUGA__UGUACUUGUUGC
...(((((..((((...(..(((((....((((((((....))))))))............)))))..)...))))...((........))..))))) (-27.34 = -27.59 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:10 2006