Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,469,475 – 21,469,584 |
Length | 109 |
Max. P | 0.996328 |
Location | 21,469,475 – 21,469,584 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -38.20 |
Consensus MFE | -28.41 |
Energy contribution | -29.72 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.03 |
Mean z-score | -4.08 |
Structure conservation index | 0.74 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21469475 109 + 27905053 UCGAUUACGCUGCUCUUGCUG---UUGCUGCAGCGGCGGCUGCUGCAAAAACAAACCAACCAAAAA--------AUGGCUUGGCAAAUCUAGAAGAAUUGGAAGCAAGAGCAAAUCAAAU ..((((....(((((((((((---((..((((((((...))))))))..)))...(((((((....--------.))).))))(((.((.....)).)))..)))))))))))))).... ( -39.00) >DroSec_CAF1 76245 119 + 1 UCGAUUACGCUGCUCUUGCUGUC-UUGCUGCAGCGGCGGCUGCUGCAAAAACAAACCAACCAAAAAAUAGCAAAAUGGCUUGGCAAAUGUAGAAGAAUUGGAAGCAAGAGCAAAUCAAAU ..((((....((((((((((.((-((.((((((((((....))))).........(((((((.............))).))))....)))))))))......)))))))))))))).... ( -38.42) >DroSim_CAF1 61401 119 + 1 UCGAUUACGCUGCUCUUGCUGUC-UUGCUGCAGCGGCGGCUGCUGCAAAAACAAACCAACCAAAAAAUGGCAAAAUGGCUUGGCAAAUCUAGAAGAAUUGGAAGCAAGAGCAAAUCAAAU ..((((....((((((((((...-((((((((((((...))))))))....(((.(((.(((.....))).....))).))))))).(((((.....))))))))))))))))))).... ( -38.40) >DroEre_CAF1 77414 112 + 1 UCGAUUACGUUGCUGUUACUGCGGCGGCUGCUGUGGCGGCUGCUGCAAAAACAAACCAACCAA--A------AAAUAGCUUGGCAAAUGCAGAAGAAUUGGAAGCAAGAGCAAAUCAAAU ..((((..((((.((((..((((((((((((....))))))))))))..))))...))))...--.------.....((((.((....)).......(((....))))))).)))).... ( -37.00) >consensus UCGAUUACGCUGCUCUUGCUGUC_UUGCUGCAGCGGCGGCUGCUGCAAAAACAAACCAACCAAAAA______AAAUGGCUUGGCAAAUCUAGAAGAAUUGGAAGCAAGAGCAAAUCAAAU ..((((....((((((((((....((((.(((((....))))).)))).......(((((((.............))).))))...................)))))))))))))).... (-28.41 = -29.72 + 1.31)
Location | 21,469,475 – 21,469,584 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -37.98 |
Consensus MFE | -32.96 |
Energy contribution | -34.02 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.11 |
Mean z-score | -3.62 |
Structure conservation index | 0.87 |
SVM decision value | 2.68 |
SVM RNA-class probability | 0.996328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21469475 109 - 27905053 AUUUGAUUUGCUCUUGCUUCCAAUUCUUCUAGAUUUGCCAAGCCAU--------UUUUUGGUUGGUUUGUUUUUGCAGCAGCCGCCGCUGCAGCAA---CAGCAAGAGCAGCGUAAUCGA ..((((((((((((((((............((((..(((((.(((.--------....))))))))..))))((((.(((((....))))).))))---.))))))))))....)))))) ( -40.00) >DroSec_CAF1 76245 119 - 1 AUUUGAUUUGCUCUUGCUUCCAAUUCUUCUACAUUUGCCAAGCCAUUUUGCUAUUUUUUGGUUGGUUUGUUUUUGCAGCAGCCGCCGCUGCAGCAA-GACAGCAAGAGCAGCGUAAUCGA ..((((((((((((((((....................(((((((....((((.....))))))))))).((((((.(((((....))))).))))-)).))))))))))....)))))) ( -40.70) >DroSim_CAF1 61401 119 - 1 AUUUGAUUUGCUCUUGCUUCCAAUUCUUCUAGAUUUGCCAAGCCAUUUUGCCAUUUUUUGGUUGGUUUGUUUUUGCAGCAGCCGCCGCUGCAGCAA-GACAGCAAGAGCAGCGUAAUCGA ..((((((((((((((((..(((.((.....)).))).(((((((....((((.....))))))))))).((((((.(((((....))))).))))-)).))))))))))....)))))) ( -43.60) >DroEre_CAF1 77414 112 - 1 AUUUGAUUUGCUCUUGCUUCCAAUUCUUCUGCAUUUGCCAAGCUAUUU------U--UUGGUUGGUUUGUUUUUGCAGCAGCCGCCACAGCAGCCGCCGCAGUAACAGCAACGUAAUCGA ..((((((((((.((((.............(((...(((((.(.....------.--..).))))).)))...(((.((.((.((....)).)).)).))))))).))))....)))))) ( -27.60) >consensus AUUUGAUUUGCUCUUGCUUCCAAUUCUUCUACAUUUGCCAAGCCAUUU______UUUUUGGUUGGUUUGUUUUUGCAGCAGCCGCCGCUGCAGCAA_GACAGCAAGAGCAGCGUAAUCGA ..(((((((((((((((...................(((((.(((.............)))))))).((((.((((.(((((....))))).)))).)))))))))))))....)))))) (-32.96 = -34.02 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:05 2006