| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,460,023 – 21,460,121 |
| Length | 98 |
| Max. P | 0.708719 |
| Location | 21,460,023 – 21,460,121 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.58 |
| Mean single sequence MFE | -27.96 |
| Consensus MFE | -19.25 |
| Energy contribution | -19.33 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21460023 98 + 27905053 --CUGGGC-----AGCAA-------AAAGCAGUUGCUUGAUGUG--CAGCGCAUAUCCGUUUGUCUUUAGCUUCCUUUUGGUAAUGACGACAGAG-CC---GAAAGAAGCAGCUGCCG --...(((-----(((..-------.((((....))))((((((--(...)))))))............(((((.(((((((..((....))..)-))---))))))))).)))))). ( -37.90) >DroVir_CAF1 65775 96 + 1 -----GAA-----AAAAA-------AAGACAGUUGCUUGAUGUG--CAGCGCAUAUCCGUUUGUCUUUAGCUUCCUUUUCGUAAUGACGACAAACCCA---AAAAGAAGCAGCUGCCA -----...-----.....-------..(.(((((((((((((((--(...))))))).(((((((.(((...............))).)))))))...---.....))))))))).). ( -26.96) >DroGri_CAF1 54063 95 + 1 -----GCA-----GAAAA-------AAAACAGUUGCUUGAUGUG--CAGCGCAUAUCCGUUUGUCUUUAGCUUCCUUUUCGUAAUGACGACAAAC-CA---AAAAGAAGCAGCUGCCA -----...-----.....-------....(((((((((((((((--(...))))))).(((((((.(((...............))).)))))))-..---.....)))))))))... ( -26.36) >DroWil_CAF1 163851 108 + 1 --CGAAGC-----AAAGAAGAAACACACACAGUUGCUUGAUGGGUCCAG-GCAUAUCCGUUUGUCUUUAGCUUCCUUUUCGUAAUGACGACAGAG-CCCUGAAAAGUAGCAGCUGCC- --......-----................((((((((....(((..(((-(((........)))))............((((....))))..)..-)))........))))))))..- ( -23.50) >DroMoj_CAF1 52726 95 + 1 -----GAA-----AACAA-------AAAACAGUUGCUUGAUGUG--CAACGCAUAUCCGUUUGUCUUUAGCUUCCUUUUCGUAAUGACGACAAAC-CA---AAAAGAAGCAGCUGCCA -----...-----.....-------....(((((((((((((((--(...))))))).(((((((.(((...............))).)))))))-..---.....)))))))))... ( -26.36) >DroAna_CAF1 146945 105 + 1 CCCAGGGAAUGAAAAUAA-------AAAACAGUUGCUUGAUGUG--CAGCGCAUAUCCGUUUGUCUUUAGCUUCCUUUUCGUAAUGACGACAGAG-CC---GAAAGAAGCAGCUGCCG ....((..((....))..-------....((((((((.((((((--(...)))))))......(((((.((((.....((((....))))..)))-).---.))))))))))))))). ( -26.70) >consensus _____GGA_____AAAAA_______AAAACAGUUGCUUGAUGUG__CAGCGCAUAUCCGUUUGUCUUUAGCUUCCUUUUCGUAAUGACGACAAAC_CA___AAAAGAAGCAGCUGCCA .............................(((((((((((((((.......))))))..((((((.(((....(......)...))).))))))............)))))))))... (-19.25 = -19.33 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:57 2006