Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,721,411 – 2,721,531 |
Length | 120 |
Max. P | 0.618973 |
Location | 2,721,411 – 2,721,531 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.96 |
Mean single sequence MFE | -31.15 |
Consensus MFE | -25.32 |
Energy contribution | -25.52 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.81 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2721411 120 - 27905053 UGAGCCAGCCAGGAGCUCAUACAAAUUGAAAUUUCAUUGUUGGCGUAAUCGCCAGCGAUUUGUAAUCGCGAAAUUCAGUGAAUGUGCUCACGUUUAUGUCACAGAAUCACAUGAAUAAUA ............((((.(((....((((((.((((.....(((((....)))))(((((.....)))))))))))))))..))).))))..((((((((.........)))))))).... ( -33.80) >DroSec_CAF1 31719 117 - 1 UGAGCCAGCCAGGAGCUCAAACAAAUUGAAAUUUCAUUGUUGGCGUAAUCGCCAGCGAUUUGUAAUCGCGAAAUUCAGUGAAUGUGCUCAAGUUUAUGUCACAGAAUCACAUAAAU---A (((((.(((.....)))...(((.((((((.((((.....(((((....)))))(((((.....)))))))))))))))...)))))))).((((((((.........))))))))---. ( -33.00) >DroSim_CAF1 32843 117 - 1 UGAGCCAGCCAGGAGCUCAAACAAAUUGAAAUUUCAUUGUUGGCGUAAUCGCCAGCGAUUUGUAAUCGCGAAAUUCAGUGAAUGUGCUCACGUUUAUGUCACAGAAUCACAUGAAU---A (((((.(((.....)))...(((.((((((.((((.....(((((....)))))(((((.....)))))))))))))))...)))))))).((((((((.........))))))))---. ( -32.80) >DroEre_CAF1 32955 117 - 1 UGAGCCAGCCAGGAGCUCAAACAAAUUGAAAUUUCAUUGUUGGCGUAAUCGCCAGCCAUUUGUAAUCGCAAAACUCAGUGAAUGUGCUCACGUUUAUGUCACAGAAUCACAUAAAU---A (((((((..((.(((.((((.....)))).........(((((((....)))))))..(((((....))))).)))..))..)).))))).((((((((.........))))))))---. ( -29.20) >DroYak_CAF1 32766 117 - 1 UGAGCCAGUCAGGAGCUCAAACAAAUUGAAAUUUCAUUGUUGGCGUAAUCGCCAGCCAUUUGUAAUCGCGAAAUUCAGUGAAUGUGCUCACGCUUAUGUCACAGAAUAACAUGAAU---A ((((((......).))))).(((((((((....)))..(((((((....))))))).))))))..(((.(..((((.((((....((....)).....)))).))))..).)))..---. ( -27.90) >DroAna_CAF1 31144 114 - 1 UG--GCAGUCAGGAGCACAAACAAAUUGAAUUCGCAUUGUUGGCAUAAUCGCCGGCCAUUUGUAAUCGAGU-AUUCAGUGAAUGUGCUCACGUUUUUGUCACAAAAUCAUAUGUAC---G ((--((((...((((((((.....(((((((.......((((((......)))))).(((((....)))))-)))))))...))))))).)....))))))...............---. ( -30.20) >consensus UGAGCCAGCCAGGAGCUCAAACAAAUUGAAAUUUCAUUGUUGGCGUAAUCGCCAGCCAUUUGUAAUCGCGAAAUUCAGUGAAUGUGCUCACGUUUAUGUCACAGAAUCACAUGAAU___A ............((((.((.((((((((......))..(((((((....))))))).))))))..((((........)))).)).))))..((((((((.........)))))))).... (-25.32 = -25.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:27 2006