| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,455,559 – 21,455,670 |
| Length | 111 |
| Max. P | 0.970801 |
| Location | 21,455,559 – 21,455,670 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 87.00 |
| Mean single sequence MFE | -20.60 |
| Consensus MFE | -18.68 |
| Energy contribution | -18.88 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21455559 111 - 27905053 UAAUAAUCAAGUAGGGCAUAAUCAUAAUGCCGUAACCUUGAUGCGAAGGUAAACAAUAAUUAAGCCAGGCUGCGGGGACCUUCUAU---ACACAAAAAAAAAAAUAAAAUAAAG .....((((((((.(((((.......))))).))..))))))..((((((...(........(((...)))....).))))))...---......................... ( -20.40) >DroSec_CAF1 62446 98 - 1 UAAUAAUCAAGUAGGGCAUAAUCAUAAUGCCGUAACCUUGAUGCGAAGGUAAACAAUAAUUAAGCCAGGCUGCGGGGACCUUCUAU---ACACACAAA-AAA------------ .....((((((((.(((((.......))))).))..))))))..((((((...(........(((...)))....).))))))...---.........-...------------ ( -20.40) >DroSim_CAF1 47321 99 - 1 UAAUAAUCAAGUAGGGCAUAAUCAUAAUGCCGUAACCUUGAUGCGAAGGUAAACAAUAAUUAAGCCAGGCUGCGGGGACCUUCUAU---ACACACAAAAAAA------------ .....((((((((.(((((.......))))).))..))))))..((((((...(........(((...)))....).))))))...---.............------------ ( -20.40) >DroEre_CAF1 63501 104 - 1 UAAUAAUCAAGUAGGGCAUAAUCAUAAUGCCGUAACCUUGAUGCGAAGGUAAACAAUAAUUAAGCUAGGCCGCGGGGACCUUCCUC---ACAAAAAAG--AAG-----GAAAAA .....((((((((.(((((.......))))).))..))))))((....)).................((((....)).))((((((---........)--.))-----)))... ( -21.20) >DroYak_CAF1 53708 105 - 1 UAAUAAUCAAGUAGGGCAUAAUCAUAAUGCCGUAACCUUGAUGCCAAGGUAAACAAUAAUUAAGCUAGGCUGCGGGAACCUUCUACUUAACAAAAAAA--AAA------AAAA- ........(((((((((((.......)))))...((((((....)))))).............((......)).........))))))..........--...------....- ( -20.60) >consensus UAAUAAUCAAGUAGGGCAUAAUCAUAAUGCCGUAACCUUGAUGCGAAGGUAAACAAUAAUUAAGCCAGGCUGCGGGGACCUUCUAU___ACACAAAAA_AAA________AAA_ .....((((((((.(((((.......))))).))..))))))..((((((...(.........((......)).)..))))))............................... (-18.68 = -18.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:56 2006