| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,451,477 – 21,451,597 |
| Length | 120 |
| Max. P | 0.548069 |
| Location | 21,451,477 – 21,451,597 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -45.82 |
| Consensus MFE | -27.19 |
| Energy contribution | -26.25 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21451477 120 - 27905053 GUACGGUCGUGGUGAAACCUUCAGAAGACACUCCUCUUACUGCCCUGGCUGUGGCCAAAUUGGCAGUGGACGCUGGCAUUCCAAAGGGUGUGAUAAAUGUGGUCACCACAAACAAAGCGG ........(((((((..((..((.....(((.(((.((((((((.((((....))))....))))))))....(((....)))..))).))).....)).)))))))))........... ( -37.10) >DroVir_CAF1 57443 120 - 1 GUACCGUGGUCGUCAAGCCCUCAGAGGAUACGCCCCUGACAGCACUCGCUGUGGCCAAGCUGGCCGAGCAAGCGGGCAUUCCCAAGGGCGUUAUCAAUGUGGUGACCACCAAGAAGGCCG .......((((.((..(((((..(.(((...((((((.(((((....)))))((((.....)))).....)).))))..)))).)))))((((((.....))))))......)).)))). ( -48.00) >DroGri_CAF1 45404 120 - 1 GCACAGUGGUUGUUAAACCGUCGGAGGAUACACCGUUGACGGCGCUCGCCGUGGCCAAGCUGGCUGAGGAGGCGGGCAUACCCCGCGGUGUCAUCAAUGUGGUGACCACCAAUAAGGCGG ((...((((........(((((((.((.....)).))))))).(((((((.(((((.....)))))....))))))).....))))(((((((((.....))))).))))......)).. ( -51.00) >DroWil_CAF1 155430 120 - 1 GCACUGUGGUGGUGAAGCCAUCUGAAGAUACCCCACUGACUGCAUUGGCAGUGGCCAAAUUGGCUGAGGAUGCUGGCAUUCCGAAGGGUGUUAUCAAUGUGGUGACCACUGCUAAAGCAG ((...(..(((((...(((((.(((.(((((((..(.((.(((...((((.(((((.....)))))....)))).))).)).)..))))))).)))..))))).)))))..)....)).. ( -47.20) >DroMoj_CAF1 45738 120 - 1 GCACUGUGGUCGUCAAGCCAUCGGAGGACACGCCACUGACAGCGCUCGCUGUUGCCAAACUGGCCGAACAGGCGGGCAUACCCAAGGGUGUGAUCAAUGUGGUGACCACCAAGAAGGCCG ((.((.((((.(((..((((.((...((((((((.((((((((....))))))(((...(((......)))...))).......)))))))).))..))))))))).))))...)))).. ( -46.10) >DroAna_CAF1 138440 120 - 1 GCACUGUGGUGGUCAAGCCCUCAGAGGAUACUCCACUUACCGCCCUGGCAGUGGCCAAAUUGGCUGAGGAUGCUGGCAUCCCGAAAGGCGUCAUCAAUGUGGUGACCACUAAAAAGGCAG ((.((.(((((((((.((((((((..(((...(((((....((....)))))))....)))..)))))).((.((((...((....)).)))).))..))..)))))))))...)))).. ( -45.50) >consensus GCACUGUGGUGGUCAAGCCAUCAGAGGAUACGCCACUGACAGCACUCGCUGUGGCCAAACUGGCUGAGGAGGCGGGCAUUCCCAAGGGUGUCAUCAAUGUGGUGACCACCAAGAAGGCAG ((....((((......(((.((((.((.....)).)))).....((((((.(((((.....)))))....))))))..........)))((((((.....)))))).)))).....)).. (-27.19 = -26.25 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:53 2006