Locus 7996

Sequence ID 3R_DroMel_CAF1
Location 21,449,389 – 21,449,482
Length 93
Max. P 0.921551
window12872

overview

Window 2

Location 21,449,389 – 21,449,482
Length 93
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 74.78
Mean single sequence MFE -20.71
Consensus MFE -12.65
Energy contribution -13.52
Covariance contribution 0.86
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.61
SVM decision value 1.14
SVM RNA-class probability 0.921551
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21449389 93 - 27905053
GCAGUCAAGUUCGCGCCUUCAUGACGUACAGUUCGAAACACUAAGCAAA-AA-GCCCU-ACAGGCUUU----GGUAGCUA--AU-AGCUACACUUGACAAUCC
...(((((((..((...(((..(((.....))).))).......))..(-((-(((..-...))))))----.(((((..--..-.))))))))))))..... ( -23.70)
>DroPse_CAF1 48914 91 - 1
ACAGUCAACUUUGCGCCUUCAUGACGUACAGUUCCAAACAUCAAAUAAGAAAGGCCUUUUAAGGCUUU----AGUAGCUUCCAA-AGCUACACUUA-------
......((((.((((.(.....).)))).))))............((((.(((((((....)))))))----.((((((.....-)))))).))))------- ( -21.70)
>DroSim_CAF1 40873 93 - 1
GCAGUCAAGUUCGCGCCUUCAUGACGUACAGUUCAAAACACUAAGCAAA-AA-GCCCU-ACAGGCUUU----AGUAGCUA--AU-AGCUACAUUUGACAACCC
...(((((((..(((.(.....).))).....................(-((-(((..-...))))))----.(((((..--..-.))))))))))))..... ( -21.30)
>DroEre_CAF1 57721 93 - 1
GCAGUCAAGUUCGCGCCUUCAUGACGUACAGUUCGAAACACUAAGCAAA-AA-GCCCU-AAACGCUUU----GGUAGCUC--CU-AGCUACACUUGACAACCC
...(((((((..(((..(((..(((.....))).))).......((...-..-))...-...)))...----.(((((..--..-.))))))))))))..... ( -20.60)
>DroMoj_CAF1 43930 95 - 1
GCAGUUAAAUGCGCGGUUUCAUGUCGUACAGUUCCAUACACCAAGUUUA-AG-GCCUU-UUAGGCUAAUCCAAGUAGCUC---A-AGCUACGCCUAACAAUA-
(((......)))((((.....((..(((........)))..))......-.(-(((..-...))))...))..(((((..---.-.))))))).........- ( -18.80)
>DroAna_CAF1 136032 94 - 1
UCAGUCCAUUUCGCGCCUUCAUGACGUACAGUCGAAAUCACUAAAGAAU-AA-GCCUUUUCAGGCUUU----CGUAGCUC--UUAAGCUACACUCUACA-CCC
...(((................)))(((.(((.............(((.-.(-((((....)))))))----)((((((.--...))))))))).))).-... ( -18.19)
>consensus
GCAGUCAAGUUCGCGCCUUCAUGACGUACAGUUCAAAACACUAAGCAAA_AA_GCCCU_ACAGGCUUU____AGUAGCUC__AU_AGCUACACUUGACAACCC
...(((((....(((.(.....).)))..........................(((......)))........((((((......))))))..)))))..... (-12.65 = -13.52 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:52 2006